PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00180.1_g00018.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 582aa MW: 65894.7 Da PI: 7.096

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00180.1_g00018.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.1	6.4e-30	117	202	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+ql Rsa1.0_00180.1_g00018.1 117 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQL 200 8***********************************999*************************98..55667***** PP trihelix 86 ea 87 ea Rsa1.0_00180.1_g00018.1 201 EA 202 85 PP
2	trihelix	52.5	1.3e-16	414	498	2	82
trihelix 2 WtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnk.rykkikegekkrtsessstcpyf 82 W +qe+ +L e+r++m++++++ g++ + lWeev++k+ + gf +rs+ Ckekwe +++ ++k+ k+++kkr+++ss +c + Rsa1.0_00180.1_g00018.1 414 WDEQEIIKLREIRSSMDSAFQEvleGCSHEFLWEEVAAKLTQLGFdQRSALVCKEKWERISNeKMKEKKQINKKRKENSS-SCGVY 498 *******************65559***************999**********76268888888888865555.55433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.12	114	177	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.98	116	175	IPR017877	Myb-like domain
Pfam	PF13837	1.9E-20	117	203	No hit	No description
CDD	cd12203	2.23E-19	117	182	No hit	No description
SMART	SM00717	15	410	476	IPR001005	SANT/Myb domain
CDD	cd12203	1.63E-14	414	481	No hit	No description
Pfam	PF13837	1.5E-9	414	498	No hit	No description
PROSITE profile	PS50090	6.133	414	474	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MEDHHSQYGI PELRQLMKGG GRTTTAASPS TSSHFPSDFF GFNLAAPPQQ QRLHQFTTDH 60 QEMGFLPHGI HGLGGSSSTT AGNNSNLNAS TCGGGVGFGG FLDGGGFSGG DGGGTGRWPR 120 QETLTLLEIR SRLDHKFKEA NQKGPLWDEV SRIMSEEHGY QRSGKKCREK FENLYKYYKK 180 TKEGKAGRQD GKHYRFFRQL EALYGDSNNL VSIPNHNTQF MSNALHGFQT QNVTTTTSNI 240 HHSVDALHGF HHQQSLSLSN NYNSSEMELM TSSSEGNDSS SRRKKRSWKA KIKEFIDVSM 300 KRLIERQDAW LEKLTKVIED KEEQRMMKEE EWRKREAARV DKEHLFWAKE RERMEARDVA 360 VIEALQYLTG KQLIKPLGSS PEERNDEIQN NNENGSDQTM TTNNVSVKGS GRFWDEQEII 420 KLREIRSSMD SAFQEVLEGC SHEFLWEEVA AKLTQLGFDQ RSALVCKEKW ERISNEKMKE 480 KKQINKKRKE NSSSCGVYYP RTEENQICNN QESGYNDSDQ HHQTMNEQGN NVGSSTSNAN 540 ANAGNPSGAM AASTNCFPFF MGDGDQNLWE SYGLRLSKGE NQ

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MEDHHSQYGI PELRQLMKGG GRTTTAASPS TSSHFPSDFF GFNLAAPPQQ QRLHQFTTDH  60
QEMGFLPHGI HGLGGSSSTT AGNNSNLNAS TCGGGVGFGG FLDGGGFSGG DGGGTGRWPR  120
QETLTLLEIR SRLDHKFKEA NQKGPLWDEV SRIMSEEHGY QRSGKKCREK FENLYKYYKK  180
TKEGKAGRQD GKHYRFFRQL EALYGDSNNL VSIPNHNTQF MSNALHGFQT QNVTTTTSNI  240
HHSVDALHGF HHQQSLSLSN NYNSSEMELM TSSSEGNDSS SRRKKRSWKA KIKEFIDVSM  300
KRLIERQDAW LEKLTKVIED KEEQRMMKEE EWRKREAARV DKEHLFWAKE RERMEARDVA  360
VIEALQYLTG KQLIKPLGSS PEERNDEIQN NNENGSDQTM TTNNVSVKGS GRFWDEQEII  420
KLREIRSSMD SAFQEVLEGC SHEFLWEEVA AKLTQLGFDQ RSALVCKEKW ERISNEKMKE  480
KKQINKKRKE NSSSCGVYYP RTEENQICNN QESGYNDSDQ HHQTMNEQGN NVGSSTSNAN  540
ANAGNPSGAM AASTNCFPFF MGDGDQNLWE SYGLRLSKGE NQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00180.1_g00018.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF170837	0.0	KF170837.1 Brassica rapa subsp. chinensis PTL mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447020.1	0.0	PREDICTED: trihelix transcription factor PTL
Swissprot	Q9LZS0	0.0	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A397XWT3	0.0	A0A397XWT3_BRACM; Uncharacterized protein
STRING	Bra009518.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	0.0	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]