PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00187.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 165aa    MW: 18655.4 Da    PI: 8.2415
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00187.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.7e-083572544
                             -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                               eE++l+ + +++ G + W++Ia +++ gRt+ ++  +w
  Rsa1.0_00187.1_g00016.1 35 NLEEEDLICRMHNLIGDR-WELIAGRIP-GRTAAEIERFW 72
                             579*************99.*********.********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.0E-53078IPR001005SANT/Myb domain
CDDcd001672.27E-63372No hitNo description
SuperFamilySSF466897.99E-73573IPR009057Homeodomain-like
PfamPF002491.8E-73673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-103773IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010026Biological Processtrichome differentiation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048765Biological Processroot hair cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDKQLRTKQT KTNPVLTSSL SKEVSSLDRQ AVNMNLEEED LICRMHNLIG DRWELIAGRI  60
PGRTAAEIER FWVMKIPLLS FFLIIDEKGQ SKNMWLRDSG AVRQRTQTSS TPMLHFETLS  120
IVDSLSSIAS QVMKENFGVA LENQTPCIQG QAGMSSLISN HVYNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00187.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC1427083e-51LC142708.1 Brassica rapa subsp. nipposinica ETC1 mRNA for MYB-like transcription factor ETC1, partial cds, cultivar: Kyo-mizore.
GenBankLC1427093e-51LC142709.1 Brassica rapa subsp. nipposinica ETC1 mRNA for MYB-like transcription factor ETC1, partial cds, cultivar: Kyo-nishiki.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32328194
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01060.23e-34CAPRICE-like MYB3