PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00190.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 175aa    MW: 20129.7 Da    PI: 7.2532
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00190.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-051941223
                             EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                             +C+ C+  Fs++ +L +H +t H
  Rsa1.0_00190.1_g00007.1 19 ECSLCNHIFSTPQDLISHTNTfH 41
                             5*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002802041IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MMNGFGMKRD LMQVTDPREC SLCNHIFSTP QDLISHTNTF HPSHHFSSFS PSAAAAPTTF  60
RHYTNLNRNP NPVFQAGNRF DLNYYRRGYT DEQERLHGGF PAITPANRAN FPFGQQEKRP  120
KLMNLFPAMP SEDLRTLPLI CQLEQRIPHD TAMERDETIS DSIDLTLRLS LFDTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00190.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118648.16e-68PREDICTED: uncharacterized protein LOC103843651
TrEMBLA0A3P5YAY34e-66A0A3P5YAY3_BRACM; Uncharacterized protein
TrEMBLM4EUM83e-66M4EUM8_BRARP; Uncharacterized protein
STRINGBra032510.1-P5e-67(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.14e-33C2H2-like zinc finger protein