PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00193.1_g00014.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 256aa MW: 27177.3 Da PI: 6.654

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00193.1_g00014.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.2e-05	142	182	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq Rsa1.0_00193.1_g00014.1 142 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 182 678889999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.877	132	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-11	137	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.25E-4	140	186	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-7	140	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MVEAPGAPSF SELLMLSDGF LSSSEGHHRE ANGGDGGEDS FSFVFSGTNG SKMLCFSGDC 60 QNGDESLFQE PSLPSGVSLS DPSSCTVDIC KKSSDTCTEE KSTKPTNKKR TGSGNGQNMD 120 HNRKPSKKCQ KNQDKSSVGI AKVRKERLGE RIAALQQLVS PYGKTDAASV LHEAMGYIKF 180 LQDQIQVLCS PYLINYSLDG GAVTGDITPG KKARDLRSRG LCLVPVSSTV NVENSNGADL 240 WSPATASIGH TMSPSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00193.1_g00014.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487094.1	0.0	PREDICTED: transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	1e-134	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A078I5R4	1e-174	A0A078I5R4_BRANA; BnaA05g20570D protein
TrEMBL	A0A397ZLA2	1e-174	A0A397ZLA2_BRACM; Uncharacterized protein
TrEMBL	M4E0Y1	1e-174	M4E0Y1_BRARP; Uncharacterized protein
STRING	Bra022428.1-P	1e-175	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-136	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]