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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Rsa1.0_00193.1_g00015.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family | HB-PHD | ||||||||
| Protein Properties | Length: 695aa MW: 77385.2 Da PI: 4.4309 | ||||||||
| Description | HB-PHD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 44.1 | 3.5e-14 | 589 | 634 | 8 | 53 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53
t+ +++L e F++nryp+ ++re LAk+l++t +qV +WF N R
Rsa1.0_00193.1_g00015.1 589 TNPKTQRLFESFHENRYPDVSTRENLAKELQMTVKQVNNWFRNTRF 634
6678999************************************995 PP
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| 2 | PHD | 39.9 | 9.3e-14 | 244 | 298 | 1 | 50 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50
+C+ Cg+ + +++++lCdg C++ fH++C++++l++e++p + +wlC+ C +
Rsa1.0_00193.1_g00015.1 244 FCSKCGSeeLHVDNDIILCDGfCDRGFHQYCVQPPLRKEDIPPDdeSWLCPGCAC 298
69****976667********88*******************99999*******97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57903 | 8.42E-14 | 234 | 299 | IPR011011 | Zinc finger, FYVE/PHD-type |
| Gene3D | G3DSA:3.30.40.10 | 4.2E-13 | 240 | 298 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| PROSITE profile | PS50016 | 11.136 | 242 | 299 | IPR019787 | Zinc finger, PHD-finger |
| SMART | SM00249 | 5.6E-10 | 244 | 297 | IPR001965 | Zinc finger, PHD-type |
| CDD | cd15504 | 4.16E-26 | 244 | 296 | No hit | No description |
| Pfam | PF00628 | 3.1E-11 | 244 | 298 | IPR019787 | Zinc finger, PHD-finger |
| PROSITE pattern | PS01359 | 0 | 245 | 296 | IPR019786 | Zinc finger, PHD-type, conserved site |
| PROSITE profile | PS50071 | 12.779 | 579 | 639 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 8.8E-10 | 580 | 643 | IPR001356 | Homeobox domain |
| Gene3D | G3DSA:1.10.10.60 | 1.7E-13 | 589 | 643 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.65E-13 | 589 | 636 | IPR009057 | Homeodomain-like |
| Pfam | PF00046 | 9.9E-12 | 589 | 634 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 1.35E-11 | 593 | 633 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 695 aa Download sequence Send to blast |
MERGNRRRRT RSSSGSALDQ TNGGGEVTPP PDKVSQQQSN VSVLLPLKKT PEEAESLPHM 60 NDLKESTNEE QQPTTASVTV KKSSGTKFSG SHRELVLGLP CRGQFEIKRS SKKLGGNKRA 120 QRSKEAATPV SSVNGSKKRK DYISKVEVRE DDEYTRIKKK LRYFLNRINY EQSLIDAYSL 180 EGWKGSSAEK LRPEKELERA KKEILRRKVK IRELIQHLDT LCAEGNIPES LFNSDGEISS 240 EDIFCSKCGS EELHVDNDII LCDGFCDRGF HQYCVQPPLR KEDIPPDDES WLCPGCACKD 300 YSFDLLNDSL GTKLSVSDSW EKVFPEAAAA MAGGGSQNLD CDLPSDDSED EEYDPDGLND 360 AEGDGDGSDD SDDDESENED GSSDESASDV MIGSFKDAKD IMNLPSDDSE DDDYDPDAPT 420 RDEDVMQESS NSDDSDSEDV ETSSKGDESD EQDKVTPRGK LGRKKAQLSD VSISESDAGI 480 GDDDVPGRRK VERLDYKKLY DEEYENVPTS SSDDEDWDKI AGKEDSESAD EGDTVPLEQP 540 SKAEDRISTQ KPKREYKKAT LIAPQETPPP RENGCCSVEK SISASSKQTN PKTQRLFESF 600 HENRYPDVST RENLAKELQM TVKQVNNWFR NTRFSTSKTM SSKEDVEKLR TDKECEGETS 660 VAGSSKQAME TEPIAENKNG ASESTSTGSR KRRRR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 155 | 161 | RIKKKLR |
| 2 | 486 | 493 | GRRKVERL |
| 3 | 689 | 693 | RKRRR |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Binds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Rsa1.0_00193.1_g00015.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018486859.1 | 0.0 | PREDICTED: homeobox protein HAT3.1-like isoform X2 | ||||
| Swissprot | Q04996 | 0.0 | HAT31_ARATH; Homeobox protein HAT3.1 | ||||
| TrEMBL | A0A397ZCP3 | 0.0 | A0A397ZCP3_BRACM; Uncharacterized protein | ||||
| STRING | Bo5g114050.1 | 0.0 | (Brassica oleracea) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM7270 | 25 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G19510.1 | 1e-152 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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