PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00194.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 376aa    MW: 41764.8 Da    PI: 7.7447
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00194.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-112147127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             +++++C+++ rtG C++G++C+F+H+p
  Rsa1.0_00194.1_g00021.1 21 PGEPNCSYYIRTGLCRFGSTCRFNHPP 47
                             5789*********************97 PP
2zf-CCCH37.73.5e-126892327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                             +++C ++++tGtCk+G +CkF+H++
  Rsa1.0_00194.1_g00021.1 68 QPECEYYLKTGTCKFGVTCKFHHPR 92
                             799********************96 PP
3zf-CCCH382.9e-12114138327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C +f+rtG+Ck+G++CkF+H++
  Rsa1.0_00194.1_g00021.1 114 EVDCAYFLRTGHCKFGATCKFNHPQ 138
                              578********************97 PP
4zf-CCCH37.24.9e-12259285127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+f+++tG Ck+G  CkF+H++
  Rsa1.0_00194.1_g00021.1 259 PGQPECQFYMKTGDCKFGTVCKFHHPR 285
                              5789*********************96 PP
5zf-CCCH38.52e-12305331127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++lC f++r+G+Ck+G++CkF+H++
  Rsa1.0_00194.1_g00021.1 305 PGEPLCVFYSRYGICKFGPSCKFHHPM 331
                              589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.542048IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-42047IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-82247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-62548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-42646IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1086593IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-56592IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-96892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-47192IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99111139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6114140IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4117137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22258286IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5258285IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8260285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6262287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4264286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507304332IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7304331IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9306331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6307332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4309330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MWQMNLNPDE TMETGSYPER PGEPNCSYYI RTGLCRFGST CRFNHPPDRE MVIATARMRG  60
EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNKAGIAGR VSLNMLGYPL RSNEVDCAYF  120
LRTGHCKFGA TCKFNHPQPQ PTTNLMVPTS GQQQSYPWSR ASFIPSPRWQ DPSGYTSLIM  180
PQGVVPVQGW NPYSGQLGAV SPSGTGNEHN NYRNLQQSEI KESGGSQSQG SFSGLNPGSS  240
VPLGGFYALP SENVFPERPG QPECQFYMKT GDCKFGTVCK FHHPRDRQAP PPDCLLSPIG  300
LPLRPGEPLC VFYSRYGICK FGPSCKFHHP MEVFAYDNTA SETDEVVETS SGHSRRVSVS  360
ETRQATTTTS GEDTTN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00194.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493196.10.0PREDICTED: zinc finger CCCH domain-containing protein 33
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A078INM20.0A0A078INM2_BRANA; BnaA05g33310D protein
STRINGBra040604.1-P0.0(Brassica rapa)
STRINGBo5g151450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]