PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00195.1_g00030.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 344aa    MW: 37690.3 Da    PI: 8.5854
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00195.1_g00030.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox184.9e-061474755
                             --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                 Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                             f+  +++e+e++ ++  ++ p +++ e LA+k            ++ +q+ +WFqNrR+  
  Rsa1.0_00195.1_g00030.1 14 FNLAEVTEMEAVLQQhdTSMPGRHTLEALAEKFsgtverkgktVVQFKQIWNWFQNRRYAL 74
                             6667788888888876689999**********999999999999999***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-10476IPR009057Homeodomain-like
PROSITE profilePS500718.843577IPR001356Homeobox domain
SMARTSM003890.002781IPR001356Homeobox domain
CDDcd000866.51E-41375No hitNo description
Gene3DG3DSA:1.10.10.602.9E-71379IPR009057Homeodomain-like
PfamPF167191.0E-40137265IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRPPSNGSP AFRFNLAEVT EMEAVLQQHD TSMPGRHTLE ALAEKFSGTV ERKGKTVVQF  60
KQIWNWFQNR RYALRAKGNK APGKLNVSSM PRASLDPTNQ MRNVFPPSAG PKPTHMTGPI  120
TTPSPSGVMR SGSDNSYLEF EAKSARDGAW YDVQAFLAHR NLEIGDPEVQ VRFAGFEVEE  180
DEWINVKRNV RQRSLPCEAS ECVAVLAGDL VLCFQEGKDQ ALYFDATVLD AQRRRHDVRG  240
CRCRFLVRYG HDQSEQEIVP LRKICRRPET DYRLQQLHSA SANDFANSKP APLDAAAKAP  300
LPQSSASAPN VVPPDVKDTS LSGAASASAQ PSSNAAATVP AGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-451382694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-451382694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-451382694134SHH1 SAWADEE
4iur_B2e-451382694134SHH1 SAWADEE
4iut_A2e-451382694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-451382694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-451382694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-451382694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-451382694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-451382694134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00195.1_g00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930420.0AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034280.0BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438587.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X3
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A078G0K40.0A0A078G0K4_BRANA; BnaA01g26780D protein
STRINGBra037587.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-173sequence-specific DNA binding transcription factors;sequence-specific DNA binding