PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00198.1_g00034.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 628aa MW: 70405 Da PI: 8.096

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00198.1_g00034.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.1e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C++ F ++ n++rH r+H Rsa1.0_00198.1_g00034.1 96 HKCEKCDREFCSPVNFRRHKRMH 118 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.679	96	123	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0077	96	118	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
MEVVKQDGND SLDMLIRRAV GKDPFLTFHR PENSPVQLFQ LLHSLERPGH SLSYVIGSDI 60 VSVPSGFSRI WNQFVDIYSL IVMRWPLLTP LKIQLHKCEK CDREFCSPVN FRRHKRMHRR 120 STTPDKYSGK ERDALGAFWD KLSVVDAKEI LSLKSMMLEN VRGESVESGL SSLIENPGYT 180 ALPQYYLRAG SNLLDIIQGR PLRFPISSNQ LFSFLDDASE KTFMSNEAAS MQKYIFDGEN 240 GKNVLEAKNV VACTSFLLEQ QLIKAWLADK DAEALRCQNL LVEEEEAAQR RQAELLERKK 300 RKKLRQKEQR VKDQTKDVKE DESTTSEEEQ QSPAESSSAL SVASDSEAQR SDSIPTEDSS 360 SLEEPQVLET DNERNGESQA PMVDDHGVGN GQNIERRNGR REMERSQYGM PNGFHGNHAP 420 KLAGMRKNGT NRDARANTTK VWSRKIDNPR SISPDAVVAE QEQTKNSEVL IGSISVTIQN 480 SCLGGEHNQA KCSEEEGRTK AVEAKPTSEQ STVEVSRPVS SQGRKVLTAN GNADKKNNHS 540 SSTAPEVKTA HHIGLQFNNQ EAKAFLAKRW KEAISAEHVT LVLSQETDMP GNNSHESTNG 600 VKTAARPKHR MKPEKGTKVK YVPKQKIP

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

MEVVKQDGND SLDMLIRRAV GKDPFLTFHR PENSPVQLFQ LLHSLERPGH SLSYVIGSDI  60
VSVPSGFSRI WNQFVDIYSL IVMRWPLLTP LKIQLHKCEK CDREFCSPVN FRRHKRMHRR  120
STTPDKYSGK ERDALGAFWD KLSVVDAKEI LSLKSMMLEN VRGESVESGL SSLIENPGYT  180
ALPQYYLRAG SNLLDIIQGR PLRFPISSNQ LFSFLDDASE KTFMSNEAAS MQKYIFDGEN  240
GKNVLEAKNV VACTSFLLEQ QLIKAWLADK DAEALRCQNL LVEEEEAAQR RQAELLERKK  300
RKKLRQKEQR VKDQTKDVKE DESTTSEEEQ QSPAESSSAL SVASDSEAQR SDSIPTEDSS  360
SLEEPQVLET DNERNGESQA PMVDDHGVGN GQNIERRNGR REMERSQYGM PNGFHGNHAP  420
KLAGMRKNGT NRDARANTTK VWSRKIDNPR SISPDAVVAE QEQTKNSEVL IGSISVTIQN  480
SCLGGEHNQA KCSEEEGRTK AVEAKPTSEQ STVEVSRPVS SQGRKVLTAN GNADKKNNHS  540
SSTAPEVKTA HHIGLQFNNQ EAKAFLAKRW KEAISAEHVT LVLSQETDMP GNNSHESTNG  600
VKTAARPKHR MKPEKGTKVK YVPKQKIP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	303	ERKKRKKL
2	298	302	KKRKK
3	301	311	KKLRQKEQRVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00198.1_g00034.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471471.1	0.0	PREDICTED: uncharacterized protein LOC108842916
TrEMBL	M4DBP3	0.0	M4DBP3_BRARP; Uncharacterized protein
STRING	Bra013903.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5680	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	0.0	C2H2-like zinc finger protein