PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00204.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 293aa    MW: 32277.9 Da    PI: 8.3966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00204.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.3e-06628123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F++  +L  Hir H
  Rsa1.0_00204.1_g00021.1  6 FVCKYCNKKFPSGKSLGGHIRIH 28
                             89*******************99 PP
2zf-C2H212.30.000536381220
                             EETTTTEEESSHHHHHHHH CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHi 20
                             +C+ C+k+F ++  L +H+
  Rsa1.0_00204.1_g00021.1 63 QCGVCSKRFCSSKALANHM 81
                             7*****************9 PP
3zf-C2H211.20.0011235257123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C k++++   L  H r+H
  Rsa1.0_00204.1_g00021.1 235 HVCPICFKVYRSGQALGGHKRSH 257
                              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-5429IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-8428No hitNo description
PfamPF139121.5E-7626IPR007087Zinc finger, C2H2
SMARTSM003550.0056628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032633IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-85784No hitNo description
SMARTSM003550.116284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SuperFamilySSF576677.49E-5232260No hitNo description
PfamPF139125.7E-10234257IPR007087Zinc finger, C2H2
SMARTSM003550.45235257IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933235262IPR007087Zinc finger, C2H2
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEKKEFVCKY CNKKFPSGKS LGGHIRIHSP RSSLDLTGKH NNNKKRLVDE REMTPPLKQQ  60
QQQCGVCSKR FCSSKALANH MDCHNYAATT SSSGPPTMMI KRSKKQHSNS DESFSIVSSS  120
ETVQGAKDLM FLHLGRKDYN FAVDSPVPES SENTSELSSG ELLTKDKVPA VADDDNSDDG  180
SSDDDYFMNG PKKSVSVGGS LRNTGFNSFS YGDELRKSPA VKRASGANKT SRGRHVCPIC  240
FKVYRSGQAL GGHKRSHTST TIANQEERIK HKAAADMQFD LNLPAEEDSD DEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00204.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894292e-35AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461211.10.0PREDICTED: zinc finger protein ZAT1-like
RefseqXP_018487795.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A0D3CD237e-82A0A0D3CD23_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EGN97e-82A0A3P6EGN9_BRAOL; Uncharacterized protein
STRINGBo5g042740.11e-82(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2035156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.13e-40C2H2-like zinc finger protein