PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00211.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 233aa    MW: 26165.2 Da    PI: 10.3167
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00211.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.21e-10212233122
                              ---SS-EEEEEEE--TT-SS-E CS
                     WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                              ldDgy+WrKYGqK+vk++++pr
  Rsa1.0_00211.1_g00012.1 212 LDDGYRWRKYGQKVVKNTQHPR 233
                              59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-12197233IPR003657WRKY domain
SuperFamilySSF1182903.14E-9205233IPR003657WRKY domain
PROSITE profilePS5081113.758207233IPR003657WRKY domain
PfamPF031067.0E-7213233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGTINQGISL FDEPQNIINP NNTNHLGLFF SFPNQTLSSS SSSSSSSPSS LVSPFQSHHS  60
LDSFLHHNSS SFVIHPQDPI NLTANLPETL ISISSLSSPK QRDFHDGIVN LDHRRLTGGI  120
SSQRPSLDPW AWSSQARYGY SKKNNHVSET DDGVGEGGGI NNHQHHETPP RHKHTMKLLG  180
VVPTPKMKKL KTRRKVREPR FCFKTLSDVD VLDDGYRWRK YGQKVVKNTQ HPR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00211.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300350.0KF430035.1 Brassica rapa WRKY transcription factor 13 (WRKY13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478187.11e-170PREDICTED: probable WRKY transcription factor 13 isoform X1
SwissprotQ9SVB74e-96WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A0A7RE811e-127A0A0A7RE81_BRAOC; WRKY85 protein
STRINGBo7g119200.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-97WRKY DNA-binding protein 13