PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00211.1_g00039.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BBR-BPC

Protein Properties

Length: 269aa MW: 30353.5 Da PI: 9.6154

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00211.1_g00039.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	302.4	1.7e-92	9	269	15	301
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvq 100 e++++l +++++ms++aerda+++ern al++k++a+a+rd+a++qrd a++er++a++erdn+l+al+++en l+ l Rsa1.0_00211.1_g00039.1 9 EQHNALV--MNKKIMSILAERDAAVKERNEALAAKQEALAARDEALQQRDLAISERDNAIMERDNALTALQHRENHLNYIL----- 87 4556677..99***********************************************************999755433..... PP GAGA_bind 101 vlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader 186 + + +s ++ + e++ + p+++ ++e+ ++k+kk r+++++ +k k+ +e+ +++ ++++ ++ Rsa1.0_00211.1_g00039.1 88 ACAKRGGYQS------------CF-TDETHLPNPSPLSTIPHESPTTKRKKDRKQETVR----SKGKRAGGEDLNRQLASPG--KK 154 2222222221............22.2445555667777777777666666633333322....2222333567888999999..57 PP GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272 ++++++ d++ln v++De+t+PvP+C+CtG+ rqCYkWG GGWqS+CCttt+S+yPLP+++++r++Ri+grKmS+++f++lL++L Rsa1.0_00211.1_g00039.1 155 CRKDWDCNDVGLNLVTFDETTMPVPMCTCTGTARQCYKWGHGGWQSSCCTTTLSQYPLPQMPNKRHSRIGGRKMSGNVFSRLLSRL 240 9********************************************************************************* PP GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301 a+eG+dls pvDLkd+WA+HGtn+++ i+ Rsa1.0_00211.1_g00039.1 241 AGEGHDLSSPVDLKDYWARHGTNRYIIIK 269 ************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.1E-131	1	269	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.6E-90	8	269	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MMPQHQIKEQ HNALVMNKKI MSILAERDAA VKERNEALAA KQEALAARDE ALQQRDLAIS 60 ERDNAIMERD NALTALQHRE NHLNYILACA KRGGYQSCFT DETHLPNPSP LSTIPHESPT 120 TKRKKDRKQE TVRSKGKRAG GEDLNRQLAS PGKKCRKDWD CNDVGLNLVT FDETTMPVPM 180 CTCTGTARQC YKWGHGGWQS SCCTTTLSQY PLPQMPNKRH SRIGGRKMSG NVFSRLLSRL 240 AGEGHDLSSP VDLKDYWARH GTNRYIIIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00211.1_g00039.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480223.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE5-like
Swissprot	F4JUI3	1e-152	BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBL	A0A0D3DIF6	0.0	A0A0D3DIF6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F1T2	0.0	A0A3P6F1T2_BRAOL; Uncharacterized protein
STRING	Bo7g119540.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4090	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38910.1	1e-143	basic pentacysteine 5