PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00213.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 289aa    MW: 31834.8 Da    PI: 8.6873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00213.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00127897221
                             EETTTTEEESSHHHHHHHHH CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                             +C+ Cgk+F ++  L  H+r
  Rsa1.0_00213.1_g00007.1 78 PCTECGKTFWSWKALFGHMR 97
                             5******************8 PP
2zf-C2H210.70.0017163185123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ C+k+F ++  L  H  +H
  Rsa1.0_00213.1_g00007.1 163 FECGGCKKVFGSHQALGGHRASH 185
                              89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.80677104IPR007087Zinc finger, C2H2
PfamPF139124.7E-877101IPR007087Zinc finger, C2H2
SMARTSM003550.0117799IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.99E-77899No hitNo description
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-47999IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.99E-7158185No hitNo description
PfamPF139121.1E-7162186IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66163190IPR007087Zinc finger, C2H2
SMARTSM003553163185IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
PfamPF139124.9E-11226251IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-5226253No hitNo description
PROSITE profilePS501579.64227254IPR007087Zinc finger, C2H2
SMARTSM003550.11227249IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTTNNSDSDP NFHTPLTSTS NAIIPIYPNP NLQLALSPSY NQRPTKKRTR TVAFPSSSSP  60
KPKYPRKPDP NAPKITRPCT ECGKTFWSWK ALFGHMRCHP ERQWRGINPP PNHRGPTPAS  120
FSNQNQRLPN WVSLMTEEDH EVASCLLMLA NSTPSSSSCG ERFECGGCKK VFGSHQALGG  180
HRASHKNVKG CFAITNVADD PMSTVTTTTP SDHQDHQGKL VTYMGHHKCN ICFRVFSSGQ  240
ALGGHMRCHW EKEEETMVGG AFDLNVPATT QDLSTSDTSG CSLNLRLGL
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00213.1_g00007.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490300.10.0PREDICTED: zinc finger protein ZAT3-like
SwissprotO654991e-150ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A3P6F9E70.0A0A3P6F9E7_BRAOL; Uncharacterized protein
STRINGBo7g117320.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-146C2H2-like zinc finger protein