PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00220.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 89aa    MW: 10366 Da    PI: 10.303
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00220.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161562148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W +eEd++l  ++++ G g+W++ ++  g++R++k+c++rw +yl
  Rsa1.0_00220.1_g00010.1 15 KGPWMPEEDDKLRAYINKKGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62
                             79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-23765IPR009057Homeodomain-like
PROSITE profilePS5129422.9351066IPR017930Myb domain
SMARTSM007172.9E-111464IPR001005SANT/Myb domain
PfamPF002493.0E-151562IPR001005SANT/Myb domain
SuperFamilySSF466893.26E-211689IPR009057Homeodomain-like
CDDcd001674.51E-91762No hitNo description
PROSITE profilePS500903.9846389IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-76689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGRSPCCDQE KGVKKGPWMP EEDDKLRAYI NKKGYGNWRS LPKLAGLNRC GKSCRLRWMN  60
YLRPNIRRGE FSNEEESNIV RLHAILGNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00220.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834924e-92AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108343.12e-56PREDICTED: transcription factor MYB39-like
RefseqXP_013654758.12e-56transcription factor MYB39-like
SwissprotQ8GWP06e-55MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A3P6BN334e-55A0A3P6BN33_BRACM; Uncharacterized protein
TrEMBLM4DWY74e-55M4DWY7_BRARP; Uncharacterized protein
STRINGBra021033.1-P6e-56(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.12e-57myb domain protein 39