PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00220.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 734aa    MW: 82253.3 Da    PI: 6.5489
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00220.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-1797151256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              r   +++++q++e+e++Fe n++p+ +++++L+++lgLt  qVk+WFqNrR + k
  Rsa1.0_00220.1_g00012.1  97 RLYNRHSAHQIQEMEAFFEVNPHPNDSDKTRLSEELGLTPLQVKFWFQNRRNQIK 151
                              5567899********************************************8765 PP
2START144.88.2e-462484742206
                              HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                    START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetl 76 
                              la ++ qel k+ + +ep+W+k + s+n+ ++l ++e +k            ++ ea+r  +vv+m++ +lv+ +ld   +W+e++
  Rsa1.0_00220.1_g00012.1 248 LAVSCVQELAKMCATDEPLWSKKR-SDNERISLNEEEYKKMfrwpssvddnhFRREASRGNTVVIMNSINLVNAFLDAD-KWSEMF 331
                              578899******************.6777777777766666777777888888**************************.****** PP

                              S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.....-TTSEE-EE CS
                    START  77 a....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe....sssvvRael 147
                                   +a+t++ +ssg     g l lm+aelq+lsplvp R+ +f+Ry +q  +a +w+ivd  v+   kp +    + ++    +
  Rsa1.0_00220.1_g00012.1 332 CsmvsRAKTIQIVSSGvsgasGSLLLMYAELQVLSPLVPtREGYFLRYVKQnAEARKWMIVDFPVNGLIKPASsnttTDQYR---R 414
                              99999***********************************************9*********98876666654422355555...5 PP

                              SSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 148 lpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                               pSg++i+++sng+s++twvehv+++++++ h+++r  vksg+a+ga +w+a l+ qce+
  Rsa1.0_00220.1_g00012.1 415 MPSGCIIKDMSNGYSQITWVEHVEVEEKHVhHEMVREYVKSGVAFGAERWLAVLRTQCER 474
                              ******************************9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1876151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-1891147IPR009057Homeodomain-like
PROSITE profilePS5007116.74693153IPR001356Homeobox domain
CDDcd000866.93E-1794154No hitNo description
SMARTSM003892.5E-1895157IPR001356Homeobox domain
PfamPF000465.0E-1597150IPR001356Homeobox domain
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PROSITE profilePS5084843.373238477IPR002913START domain
SuperFamilySSF559611.25E-29239476No hitNo description
CDDcd088752.64E-95242473No hitNo description
SMARTSM002341.4E-30247474IPR002913START domain
PfamPF018522.4E-38248474IPR002913START domain
SuperFamilySSF559617.0E-11494684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MYEDHQTTKS SEEEGHVVTN FSDNMFGSAS SSPTGTVKTP DFKLSTFLNP NFSYIIPKEE  60
YGMVSMTEMS GWSTGSGNNP VEDSAIEQQL PPAKKKRLYN RHSAHQIQEM EAFFEVNPHP  120
NDSDKTRLSE ELGLTPLQVK FWFQNRRNQI KIEQERRDNV MLKAENENLK TENRQLQFDL  180
GRLSCSSCGG SRDKLHLENS RLRQELDRLH SFASLMNPYL PPPETARLFA DANNLLITEE  240
DKAVAMDLAV SCVQELAKMC ATDEPLWSKK RSDNERISLN EEEYKKMFRW PSSVDDNHFR  300
REASRGNTVV IMNSINLVNA FLDADKWSEM FCSMVSRAKT IQIVSSGVSG ASGSLLLMYA  360
ELQVLSPLVP TREGYFLRYV KQNAEARKWM IVDFPVNGLI KPASSNTTTD QYRRMPSGCI  420
IKDMSNGYSQ ITWVEHVEVE EKHVHHEMVR EYVKSGVAFG AERWLAVLRT QCERMASLMA  480
TNITDLGVIP SVEAKRMLMK LSQSMVRTFC LTVSNSYGQA LSESPKETAR ITTRKVCGGV  540
VLCAVSTTLL PYSHHQVFDL LRNDHRRSQM EMLFNENPFQ EVAHIANGSH PGNCISLLHF  600
HGPSSSSNNV EWMLQETCTD SSGSLVVYST VDASAVHLAM NGEDPSRIPL FPLGFSVVPV  660
NQPHVFEGIS VNLASCLLTV AVQVLVSDVT TARLNVSTAA IKNRICSTVS RISSALGSPL  720
LPEIPSSFKQ EMSN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00220.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449374.10.0PREDICTED: homeobox-leucine zipper protein HDG4-like
RefseqXP_018449376.10.0PREDICTED: homeobox-leucine zipper protein HDG4-like
SwissprotQ8L7H40.0HDG4_ARATH; Homeobox-leucine zipper protein HDG4
TrEMBLA0A078F6410.0A0A078F641_BRANA; BnaC08g10960D protein
STRINGBo8g049710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17710.10.0homeodomain GLABROUS 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]