PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00220.1_g00017.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 530aa    MW: 58886.3 Da    PI: 8.0504
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00220.1_g00017.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.2e-16741135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Rsa1.0_00220.1_g00017.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                             ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.6E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-11545No hitNo description
CDDcd002028.74E-16655No hitNo description
Gene3DG3DSA:3.30.50.101.3E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003206.9E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139191.6E-10263357IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYAPLHA RADGEENQDL  60
QRYQRIKSIS LSNNKNTETK MLKRKAIQES RQVLEFNYGL KKAKIEEDAS NRSSSGSAIS  120
NTESCAQYGS ELTGSGPSQS NAWDTTVPCK RRTCVGRPKS SSSVEKLTKD LYNILQEQQQ  180
SSVSSDEDLL FESMFTAEIG HGSVLMRDPH SFAREEESEE ASSLSSSVEN KSSISDAYSH  240
SVGAVRGGSE FVEQAIKLEQ LKRTKSQTGR VHVLGSHSSP LCSIDLKDVF NFEEFTEQFT  300
EEEQKKLMKL LPQIDSVNIL DSLRMMFESA QFKENFSLFQ KLIADGVFEM PSSSGAKLED  360
IRAFKKLALS DFNKSRLVES YNHLKVRLIL VVTLTLYLTF GQKFMDVLMQ EREKGSGDSV  420
TTASRSLNPN VPKNIVTIKR RCANQTQVKS ESRGLMRSPK SVTKMKAIHE SKVLTENNGS  480
CFSPRSLASV FGQESGGTTV FGNENDCSSD QDLLLMDLPS NGSFPQAVWQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00220.1_g00017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532400.0AK353240.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447298.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLM4DWZ50.0M4DWZ5_BRARP; Uncharacterized protein
STRINGBra021041.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26