PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00229.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 157aa    MW: 18625.3 Da    PI: 6.5079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00229.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM371e-11913410128
                      NAM  10 tdeelvveyLkkkvegkkleleev.ikev..diykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                              +de+++  yL++kv+g  +   +  ++++  d+yk ePw Lp+        + +ew +  krd ky     ++ +  +g W     
  Rsa1.0_00229.1_g00004.1   9 SDEDMIEGYLRPKVNGAATANPRYiVDNMeeDVYKREPWLLPQptD--PilNPNEWLYLGKRDWKYL---WAEGVDCEGSWIPVEG 89 
                              7***************9955544424443449*********96332..233778***********97...56667779****9888 PP

                      NAM  89 dkevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                                +++s+ +gel+g    + +     + ++     ++W+m eyrl
  Rsa1.0_00229.1_g00004.1  90 RYRIMSEdSGELIGGTMRFRYCfrnkNDKEAPMAFSNWFMREYRL 134
                              888888756677776666666554432233333589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.1711154IPR003441NAC domain
PfamPF023658.8E-64134IPR003441NAC domain
SuperFamilySSF1019414.84E-209152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MAEVRCRISD EDMIEGYLRP KVNGAATANP RYIVDNMEED VYKREPWLLP QPTDPILNPN  60
EWLYLGKRDW KYLWAEGVDC EGSWIPVEGR YRIMSEDSGE LIGGTMRFRY CFRNKNDKEA  120
PMAFSNWFMR EYRLCDKFGN PVKTRHVLCK ITCYPHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00229.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459009.11e-115PREDICTED: NAC transcription factor 29
RefseqXP_018459010.11e-115PREDICTED: NAC transcription factor 29
TrEMBLA0A397ZK761e-102A0A397ZK76_BRACM; Uncharacterized protein
STRINGXP_006292493.12e-81(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.11e-58NAC domain containing protein 27