PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00240.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 361aa    MW: 37570.2 Da    PI: 7.5808
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00240.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022251.5e-691312814153
                   DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelks.kkqsals 87 
                              g+asCqdCGnqakkdCah RCRtCCksrgfdC thv+stWvpaakrrerq+ql++ + ++ + + ++  +kr+re+   +++sal 
  Rsa1.0_00240.1_g00001.1 131 GGASCQDCGNQAKKDCAHVRCRTCCKSRGFDCPTHVRSTWVPAAKRRERQHQLSTVQPQTHQPRgDSGVPKRHRENLPaATSSALV 216
                              779*************************************************9999877777665778899999996515667889 PP

                   DUF702  88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                              +t++++++++  le+ ++P+evss+avfrcvrvssv+dgeeelaYqtavsigGh+fkG+Lyd+G+ 
  Rsa1.0_00240.1_g00001.1 217 CTRIPTHNAS-GLEVGDFPAEVSSPAVFRCVRVSSVEDGEEELAYQTAVSIGGHIFKGVLYDKGPG 281
                              9999999765.999**************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.9E-64132280IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.9E-27134176IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-26233280IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAGFFSLDGG GRGGGGGNSQ EEHHTNTNTN PPPPVSEAWL WYRNPNVNAN APSSTNAAAL  60
GTLELWQNHS QQEILFQHQQ HQQRLDLYSS AAGLGVGPSN HSQFDISGEN SNAAAGRAAA  120
LMMMRSGGSG GGASCQDCGN QAKKDCAHVR CRTCCKSRGF DCPTHVRSTW VPAAKRRERQ  180
HQLSTVQPQT HQPRGDSGVP KRHRENLPAA TSSALVCTRI PTHNASGLEV GDFPAEVSSP  240
AVFRCVRVSS VEDGEEELAY QTAVSIGGHI FKGVLYDKGP GSSGGYNVLA AGESSSGGGG  300
GHQLNLITAG SVTVATASSS TPNAGGIGSS SAAAYNDPAA LYPTPINTFM AGTQFFPNPR  360
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1916GGRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00240.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052620.0GU205262.1 Brassica rapa subsp. pekinensis stylish (STY1-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468627.10.0PREDICTED: protein SHI RELATED SEQUENCE 1
SwissprotQ9SD401e-180SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A0D3A8F70.0A0A0D3A8F7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EZB10.0A0A3P6EZB1_BRAOL; Uncharacterized protein
STRINGBo1g060520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34192864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-130Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]