PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00243.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 417aa    MW: 45447.9 Da    PI: 7.0394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00243.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08308355455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Rsa1.0_00243.1_g00009.1 308 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 355
                              8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.84E-10302359No hitNo description
SuperFamilySSF474592.09E-16302368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-16304369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37304354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-6308355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDNELFMNTE LPPAPEMAVH FEQPSSSSAM LNWALMDPNL ASNSPPQDCF MWEKSTEQQQ  60
QQQSIFDSAL SSLVSSPTPS NSNYSGGDGF IIRELIGKLG NIGNTSGDIY GAPMNSNSRS  120
ASCYATPMSS PPPMMSRTTP LTEFSGDPGF AERAAKFSCF GSRSFNGRTN NSGLPVNNNN  180
GGKIASSGKL TRVSSTPALK ALASPEFSRP MMIPAGGSPP KLPGEFSRKR KSVSKGKSKE  240
TPLPAAASPS PSFSKTAERK DEGEKGGKRR REEEGDEEEG NKGNDTKPPE PPKDYIHVRA  300
RRGQATDSHS LAERVRREKI GERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF  360
LSMKLSSVND TRLEFNVDAL VSKDAYQLFS EEDLQSIVGM GMAHNPNHES QNMKIEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00243.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886101e-140AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0029451e-140BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056371e-140BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477172.10.0PREDICTED: transcription factor bHLH78-like
SwissprotQ9FJL41e-178BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A0D3DBT10.0A0A0D3DBT1_BRAOL; Uncharacterized protein
STRINGBo7g089350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-128bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]