PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00254.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 219aa    MW: 25539.5 Da    PI: 6.8134
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00254.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.4e-2060113457
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              ++++++eq++ Le  F  ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k+
  Rsa1.0_00254.1_g00001.1  60 KRKLSEEQVRMLEMSFGDEHKLESERKDRLAKELGLDPRQVAVWFQNRRARWKN 113
                              45899***********************************************95 PP
2HD-ZIP_I/II122.12.8e-3959150293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +kr+ls+eqv++LE+sF  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+a+++++ e++rL++ev +L
  Rsa1.0_00254.1_g00001.1  59 RKRKLSEEQVRMLEMSFGDEHKLESERKDRLAKELGLDPRQVAVWFQNRRARWKNKRLEDEYTRLKNAHENVVVEKHRLDSEVLHL 144
                              8************************************************************************************* PP

              HD-ZIP_I/II  88 reelke 93 
                              +e+l++
  Rsa1.0_00254.1_g00001.1 145 KEQLHD 150
                              ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.95754114IPR001356Homeobox domain
SuperFamilySSF466897.7E-1857121IPR009057Homeodomain-like
SMARTSM003893.7E-1957118IPR001356Homeobox domain
CDDcd000866.78E-1759115No hitNo description
PfamPF000463.5E-1760113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-2061120IPR009057Homeodomain-like
PRINTSPR000311.2E-58594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000311.2E-594110IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNNQNVDDHN LLFISQMYPN VYTSSIPQQG ESKPARPRRR RKSKSVAVVG GEGSNGWFRK  60
RKLSEEQVRM LEMSFGDEHK LESERKDRLA KELGLDPRQV AVWFQNRRAR WKNKRLEDEY  120
TRLKNAHENV VVEKHRLDSE VLHLKEQLHD AEREIQRLAQ RVEGAISNSP ISSVSVVANQ  180
TTPFFGDYEV EVGDDSDGYQ NLFYSPEYID GFEWISPFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843RRRKSK
23961RRKSKSVAVVGGEGSNGWFRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00254.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455201.11e-162PREDICTED: homeobox-leucine zipper protein ATHB-21 isoform X2
SwissprotQ9ZU701e-116ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A3P6DCZ71e-131A0A3P6DCZ7_BRAOL; Uncharacterized protein
STRINGBo9g025880.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-98homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]