PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00257.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 318aa    MW: 35622.9 Da    PI: 5.6925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00257.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.3e-15122173155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Rsa1.0_00257.1_g00003.1 122 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYLKELE 173
                              79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.36E-13120177No hitNo description
SuperFamilySSF474598.64E-17121186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.418121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-14121177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-12122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.856244318IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MALEAVVYPQ DQFSFISCKD FQFHDFYFQQ EDNQDLLDTK NNIKLGQEQR QGFPSINYNG  60
KSEDTNDDYN KNDQEHLQLP KDDLLCGSAL DQPPSSDVAA GGGRRKRRRL KSSKNKEEIE  120
NQRMTHIAVE RNRRKQMNEY LAVLRSLMPP SYAQRGDQAS IVGGAINYLK ELEHHLQSIE  180
PPLKRTTVPV DTGAAAAADE QTASSVGPFS EFFAFPQYSS RPSSSSVAEG MAEIEVTMVE  240
SHASVKILAK KRPKQLLKLA ASIQSLKLTV LHLNVTTRDD SVLYSISLKV EEGSQLNTVE  300
DIAAGMNQIL RRIEEESS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102109GRRKRRRL
2104108RKRRR
3105109KRRRL
4122133RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00257.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470650.10.0PREDICTED: transcription factor bHLH96-like isoform X1
SwissprotQ9C7T41e-170BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A398AI320.0A0A398AI32_BRACM; Uncharacterized protein
TrEMBLA0A3P6ALL20.0A0A3P6ALL2_BRACM; Uncharacterized protein
STRINGBra008017.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-164bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]