PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00269.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 254aa MW: 28686.2 Da PI: 8.8641

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00269.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.4	1.1e-30	122	176	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+rW+++LH+rF++a++++GGs++AtPk+i+++m+v+gLt+++vkSHLQkYR++ Rsa1.0_00269.1_g00004.1 122 QRRRWSEDLHRRFIDALHRIGGSQVATPKQIRDVMNVDGLTNDEVKSHLQKYRMH 176 8****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.823	118	178	IPR017930	Myb domain
SuperFamily	SSF46689	9.86E-17	118	179	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-27	118	179	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-25	122	176	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-7	123	174	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MVSLCVAIEK LKEEASSSSV MMSSKLDTDN KKNWMSSAQL WISNSTNSQL PSTNEEEDRC 60 VSQPPFQTCN KPNQGGAFMS FNRSLPPPPP PAAPLSLMTP TSEILTDYNR TEQSHHIQKK 120 EQRRRWSEDL HRRFIDALHR IGGSQVATPK QIRDVMNVDG LTNDEVKSHL QKYRMHIRKH 180 PLHVAKTLSA SDQRGLLISL SRSDSPQGPL LVDRGLFSNN GGGHSSEEEE KSDGRSSWKS 240 ESRWKRQTLL DLEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00629	PBM	Transfer from PK14402.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00269.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480433.1	1e-155	PREDICTED: myb family transcription factor EFM-like
Swissprot	F4JRB0	1e-104	HHO5_ARATH; Transcription factor HHO5
TrEMBL	V4MKZ9	1e-106	V4MKZ9_EUTSA; Uncharacterized protein
STRING	XP_006411945.1	1e-107	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.2	3e-94	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]