PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00274.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 223aa    MW: 25389.8 Da    PI: 6.4948
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00274.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.32.3e-21108201498
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                              ++++  +lk + ++lp + +    +++ + k+++l +++g+sW+v ++++ + g+y++++GW++F+++n+ + gD +vF ++g+ +
  Rsa1.0_00274.1_g00003.1 108 AEVTDTNLKDDKMYLPVEAMCCTALNQ-QCKEVKLVNKQGNSWSVSFRFSESEGTYYISRGWRKFCRDNRCRNGDLFVFNVVGDGT 192
                              567889999*********984447765.668*****************************************************99 PP

                              E..EEEEE- CS
                       B3  90 felvvkvfr 98 
                              +++++ v+ 
  Rsa1.0_00274.1_g00003.1 193 TTPLLCVCL 201
                              999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-17104200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-17105193IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-15105203No hitNo description
PROSITE profilePS5086313.789105203IPR003340B3 DNA binding domain
SMARTSM010191.1E-18106203IPR003340B3 DNA binding domain
PfamPF023622.6E-19109201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MTTPQEPHFF KPLLPGFQTG VTIPLAFFSK HIQGTHINKP WKLLSDASDE SWEVIREGRT  60
LTKGDMVYHV TPFGPSCSEI LYNHPHIVNE EAEADDAPIF SYDYCFLAEV TDTNLKDDKM  120
YLPVEAMCCT ALNQQCKEVK LVNKQGNSWS VSFRFSESEG TYYISRGWRK FCRDNRCRNG  180
DLFVFNVVGD GTTTPLLCVC LKRKECTDQK LSNNFSIASS SRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00274.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553462e-86AC155346.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH081N08, complete sequence.
GenBankAP0116222e-86AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022543999.11e-127B3 domain-containing protein REM9-like
RefseqXP_022558610.11e-127B3 domain-containing protein REM9-like isoform X2
TrEMBLM4F4R31e-126M4F4R3_BRARP; Uncharacterized protein
STRINGBra036066.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-41B3 family protein