PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00274.1_g00024.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 404aa    MW: 44329.8 Da    PI: 9.9472
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00274.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.7e-11344386648
                              HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                                 rk+kNRe+A rsR+RK+ ++ eLe ++++L +eN++L k+
  Rsa1.0_00274.1_g00024.1 344 THWRKIKNRESAARSRARKQIQTMELEAEAEKLRKENQELLKK 386
                              5679**********************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-5338404IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.703341386IPR004827Basic-leucine zipper domain
PfamPF077162.4E-7342387IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.75E-8343387No hitNo description
CDDcd147073.54E-17345387No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-10346386No hitNo description
PROSITE patternPS000360347361IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDNNWNFKTL GTGPPGTINR PPVSTPLSRQ GSLFSWTLDQ IQNNLGKDCG SMNMEELLMS  60
ICSAEGTQGG VIPTNGVNEG LQKQGSITLP RILSQKTVDE VWKYITEEEL TNNDGRSTNI  120
PQIQKQPTFG DITLEEFLTR AGAVGNNNSG GYIHDPSSIS GIPNTSLSVE FQQKPLVSNV  180
LDSINIVPGN RILGSYLHPN VNGSTSAYKP RQEQQKQHNP FQPQQPIMSN PHGYGYGTHV  240
AFTSGQVNGH GIRDSYMETG DQSHQDNKVT LVQSVAPVPG GAISSVDACP QITPFPVLDG  300
IPKINAGGTS IVSPFLDTTT GRNSVRDRNR NKGIAAEKKL VEKTHWRKIK NRESAARSRA  360
RKQIQTMELE AEAEKLRKEN QELLKKQGKG ITKKRLRRTK SNIQ
Functional Description ? help Back to Top
Source Description
UniProtCould participate in abscisic acid-regulated gene expression. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00274.1_g00024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894130.0AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482665.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 8
SwissprotQ9FMM71e-102AI5L8_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 8
TrEMBLA0A078GCF30.0A0A078GCF3_BRANA; BnaA06g37000D protein
STRINGBra033649.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156311417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42910.13e-96bZIP family protein