PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00284.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 304aa    MW: 33558.8 Da    PI: 6.4209
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00284.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-193484256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                              y+GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a+++a+kkl+g+
  Rsa1.0_00284.1_g00016.1 34 TYRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 84
                             69****999.**********8...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.17E-283389No hitNo description
PfamPF008473.2E-143484IPR001471AP2/ERF domain
SMARTSM003805.2E-343497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-293490IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-203490IPR016177DNA-binding domain
PROSITE profilePS5103220.7323491IPR001471AP2/ERF domain
PRINTSPR003677.8E-103546IPR001471AP2/ERF domain
PRINTSPR003677.8E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEEEELPPAK KRNVGRSRKG CMKGKGGPEN AKCTYRGVRQ RTWGKWVAEI REPNRGTRLW  60
LGTFNTSVEA AMAYDEAAKK LYGHEAKLNL LHPQQQQQQK QGVNRNLSFS GHGSGSWAYN  120
LDTVRGLDLG LGTSNGSRGF SFLQEDNHHN SSHYLSSSGS NLSWLLPIRS SSQDQESVNT  180
TSGCGSEGGG YTFSSKFKPQ SLMMTPLDSN SSNGVWSRFL VGQENNTEYD VSSSCGSSSD  240
NKESVSVPSH GGGEGLHRPE VEEGTGYLEM DNLLEIDDLG LLIGKNGDFK NWCCDEFQHA  300
WNWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-163590359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00284.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0516261e-107AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBankAY5608531e-107AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds.
GenBankBT0260741e-107BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds.
GenBankCP0026881e-107CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443213.10.0PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618271e-151DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A078GG201e-176A0A078GG20_BRANA; BnaC09g39350D protein
TrEMBLA0A0D3EED91e-176A0A0D3EED9_BRAOL; Uncharacterized protein
STRINGBo9g155940.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-125ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]