PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00295.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 2022aa    MW: 230000 Da    PI: 9.11
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00295.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.7e-191372357
                             --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             +R+++tkeq++ Le+l+++  r+p+a+++++++ +l    +++ ++V++WFqN++a++++
  Rsa1.0_00295.1_g00013.1 13 SRWNPTKEQITLLENLYKEgIRTPNADQIQQITGRLrvhgHIEGKNVFYWFQNHKARQRQ 72
                             8*****************99**************************************96 PP
2Wus_type_Homeobox109.91.4e-351174265
        Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                             +++RW+Pt+eQi++Le+lyk+G+rtPn+++iq+it +L+ +G+ie+kNVfyWFQN+kaR+rqkq
  Rsa1.0_00295.1_g00013.1 11 SSSRWNPTKEQITLLENLYKEGIRTPNADQIQQITGRLRVHGHIEGKNVFYWFQNHKARQRQKQ 74
                             579***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.527873IPR001356Homeobox domain
SuperFamilySSF466891.88E-10979IPR009057Homeodomain-like
SMARTSM003897.1E-51077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-61372IPR009057Homeodomain-like
PfamPF000461.6E-161372IPR001356Homeobox domain
CDDcd000862.33E-41474No hitNo description
PfamPF141113.1E-18313424IPR025558Domain of unknown function DUF4283
PfamPF143922.9E-9426474IPR025836Zinc knuckle CX2CX4HX4C
Gene3DG3DSA:3.60.10.107.8E-9724946IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF562192.02E-21728946IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033725.9E-7728939IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF566725.11E-2111051406No hitNo description
PROSITE profilePS5087813.77511561455IPR000477Reverse transcriptase domain
CDDcd016501.31E-4211721437No hitNo description
PfamPF000782.8E-3411761406IPR000477Reverse transcriptase domain
CDDcd062225.90E-1218691989No hitNo description
PfamPF134562.4E-1218721990No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2022 aa     Download sequence    Send to blast
MENEGKAGTV SSSRWNPTKE QITLLENLYK EGIRTPNADQ IQQITGRLRV HGHIEGKNVF  60
YWFQNHKARQ RQKQKQERIA YFNRLLHKTS RFFRPPLCSN GTYFSSIFSL GCVSPYYLQQ  120
VGDHHNQHGH GSEYRHGNNV MNPSGGYDKR TITDHKKQLS DMTTAAARMA MPSSSLRFDR  180
FTLRDHGYNG EDINVNSNGR KTLPLFPLQP LDVASDDCVR NSSCAPGHDS PVTCFGDGGG  240
REQPFIDFFS GCSSFSFTPP PFTSLLWISL RISSHRKEIF LLLMDETLAG VMQGMSLEDD  300
VPIVLPEDED YSAVIWKVYE RVRGIALTKE SFQFIFELEL DIQTVLKQGF WTFDDWGMAL  360
DRWVECPPSN FLQTSPIWIR ISNIPVNYLT IKTIDAVAGA IGYVKDIEWD PEKPLLQDYI  420
RVQIIMDLSL PVREKKSVTL PKGGGTAMID IEYERVRKKC FHCFRLSHEK KACPIFNGNR  480
AGGSKGKEMQ SSASFQRLSQ RQHNYTLSKD IMPLLAPSLY MNCIDPEERR IREFRMKKAL  540
DELSKDPLSQ RAGLRMEDAP VISKAVNKDK GLVFDFSGVA EDDPDTTSES SSHNGGHRKR  600
MNTGNTLALV TDHHQRSMPA MKLNGASEKS SDHQHDTQQD EGDTFGLTKT TVFGGFEMGS  660
GGADMTLMSG GSKSSARKAS SWTRRGKRTT QANNKPALAN EVDGVLKRKA DVEAEVTSKL  720
SKSTGVRRLE EMCREHLPDF LFFLETKNSS DRVEGFKRSL GYDHLFLVNL VGLSGGLALF  780
WRDSHEVEIL SASDRIIDVK VKQRDLVYFI SFVYGDPVRH KRHIVWDNLK TIGLNRNAGW  840
CLVGDFNEMM NTSEKSGGPV REESSFYLFR SMARDCRIKE IPSSGDKLSW AGVREVITNG  900
VKENVWVQCR LDRAFGNSEW FRMFPRSHTT YMERLGSDHR PILTNIRGIV SKRVGRLLYD  960
KRWSDKPEKR SEVSNSKKMI VKLRVELEQE EMKLVPSMSR IVYLKLELGK LFQEEEEYWK  1020
LRSKNNWLQS GDKNTKVFHG WAKTRKMKNN ISSLTDSGGI EHTTEEAKGD IAIKYFSELF  1080
KSSNPTDAAD LLRDFEPRVT LRMNERLIKP VTDAEIKKAV KAIKSDSSPG ADGMSGHFFQ  1140
KFWEITGPQV VAEVKSFFIE GEIPQDWNFT QICLLPKKPN PTYMTDLRPI SLCAVSYKIV  1200
SNILCARLKD ILPSLVSPTQ GAFVAGRLIS DNLLIAHEMV HGLKTNPNCK GDFIAIKTDM  1260
SKAYDRVEWG FLEVLLQRMG FDSKWIQWIM MCISSVTYIV LINGQPYGRI TPERGLRQGD  1320
PLSPFLFILC AEALVHVMNQ AEIEGNITGM RLTKNCPPIQ HLLIADDSLF LCKATLKECT  1380
SFLHCLKLYG NRSGQEINFH KSSITFGADI DPVMKRLIVE LLEIDNEGGA GTYLGLPECF  1440
SGSKQKLLAF IGEKLGKRLS GRYSKTLSLG GKEVLLKSIA MALPVYAMSC FRLTKHHCQK  1500
IMSAMSSFWW NACSDKQKIH WVSWPKLCLP KDLGGLGFHD IEDFNQALLA KQAWKLLNEP  1560
QSLLAQVFKG RYYANKDFLD CGQGYRPSYA WRSILFGREL LQRGLIKSIG NGRDTYVWGE  1620
KWILDEVPRR PINRQLLFDV MLKVSALTYG SCGWDNDKLA ELFPPNETHR IQQMRPGETD  1680
DCYIWAFSRH GAYTVKTGYE MLVREKAALS GEITQQEHIR NGLKKRIWKM STLPKIRMFL  1740
WRAVSGALAV AERLTCRAVS LWSASGSLLH ANTLHRSLEE NMTYIFDMME DKSRPQAITR  1800
AIPWVLWLIW KSRNSILYAD TQVSKDKALK DMTDEVDQWF VLNYPEVQNT GERSNGGIWL  1860
PPKEGVIKCN IHANWRNAVL HSRVAWIARD ESGNVMHHAR DAIINTPNRL IAELRCVSWT  1920
LNSLSDLGVT KVVIASDYKE VMEALKSPRQ WPRYRDLIQQ VLKLQDKFEM VSFESEEVTA  1980
NGIARDIARS VLRDGRLQSY LALGGPSWLH DRLTRERNGS GI
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00295.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488005.10.0PREDICTED: uncharacterized protein LOC108858595
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-113WUSCHEL related homeobox 2