PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00295.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 200aa    MW: 23292.7 Da    PI: 4.3051
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00295.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.92.3e-112699469
                      NAM  4 GfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya 69
                             G+ F+P+d+el++ +L +k+e+ +        +e++i+  ++y+ ePw L++ +++   +++ew++F++r++ + 
  Rsa1.0_00295.1_g00016.1 26 GIYFNPEDQELIKLHLLPKLETYRkpkskdKACEDFIEMKNVYDREPWLLDH-TNHplfRKNEWFYFVTRSQVSV 99
                             99*****************998886666544455689999**********84.222345889*****99988654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-102597IPR003441NAC domain
PfamPF023655.0E-52698IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSDNYEDGGV YFDPDENMFN NDEDGGIYFN PEDQELIKLH LLPKLETYRK PKSKDKACED  60
FIEMKNVYDR EPWLLDHTNH PLFRKNEWFY FVTRSQVSVK NIGRAPSSLE HQQPLLCHRG  120
EANMVHQKED TSAVIQMVPR RSSHQDEHVG AMEVTHNVEE EDWIGDLFDK FASTGLDDQQ  180
QTPMYAASLP IEVDDDDVEV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00295.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013704002.12e-73NAC domain-containing protein 96-like
TrEMBLA0A3P6DJU53e-71A0A3P6DJU5_BRAOL; Uncharacterized protein (Fragment)
STRINGBo2g027140.12e-71(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.11e-12NAC domain containing protein 88