PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00313.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 260aa MW: 29285.9 Da PI: 5.1761

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00313.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	59.6	5.9e-19	143	199	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ g +fpr Ct++ +Cp+kk+v+r +edp ++ +tY+++H+++ Rsa1.0_00313.1_g00007.1 143 DDNHTWRKYGQKEILGFKFPR----CTHEklyKCPAKKQVQRLDEDPYTFCVTYRSSHTCH 199 8*****************6....999999*************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-19	137	199	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-18	140	200	IPR003657	WRKY domain
SMART	SM00774	8.2E-25	142	200	IPR003657	WRKY domain
PROSITE profile	PS50811	13.712	143	196	IPR003657	WRKY domain
Pfam	PF03106	8.8E-17	143	199	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEEIMSMIFN GINLVKELEF SLSAQESPES LSTSLGSVST LFGDANERLK ILLARRNSLV 60 LNQPEPKPVS MSDLDQIMMQ QIEHGLMQDY SLREGVMQGV KNIDSGPGCS FSTPRPRRRQ 120 KDVEEEKVFV AAARMGNMDT PPDDNHTWRK YGQKEILGFK FPRCTHEKLY KCPAKKQVQR 180 LDEDPYTFCV TYRSSHTCHF FTTSPISSTA ATATTDGHYG STVVNMAEAL FGNVDSVVPF 240 DESYFDYRSL FNGSGSDWDT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	4e-14	143	198	9	68	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00313.1_g00007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018459228.1	0.0	PREDICTED: WRKY transcription factor 55-like isoform X1
Swissprot	Q9SHB5	7e-76	WRK55_ARATH; WRKY transcription factor 55
TrEMBL	A0A078J5N8	1e-171	A0A078J5N8_BRANA; BnaC04g55610D protein
TrEMBL	A0A0D3BXJ1	1e-171	A0A0D3BXJ1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6C9D9	1e-171	A0A3P6C9D9_BRAOL; Uncharacterized protein
STRING	Bo4g114050.1	1e-172	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3641	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	1e-66	WRKY DNA-binding protein 55

Publications ? help Back to Top
Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116]