PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00315.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 284aa MW: 31600.8 Da PI: 8.9825

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00315.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.5e-39	16	75	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk++ Rsa1.0_00315.1_g00001.1 16 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGTLRNVPVGGSSRKNKRV 75 6899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	15	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.873	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
CNNNNTAVVV ERKARPQEKL NCPRCNSTNT KFCYYNNYSL TQPRYFCKGC RRYWTEGGTL 60 RNVPVGGSSR KNKRVPSSSS SNILLTTPSS LGLTTTLPDL NPNKSKGSSQ DLNLLSFPVM 120 QDQHQNHHVH MSQFLQMPKM EGNVNITHHQ PSALELLRRG VNVSSISYMP SGPVMDSSSN 180 VMYTSSGFPT MVDYKPSSLS FSTDHQGTGH NNHNRSDDTH HQGRVMFPFG DQMKEITSSI 240 TQEVDHDDNQ QQKSHGNNNN NNSSSPNNGY WSGMFSTTGG GSSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00315.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006418	1e-140	AC006418.4 Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete sequence.
GenBank	AJ237810	1e-140	AJ237810.1 Arabidopsis thaliana dag2 gene, exons 1-2.
GenBank	AJ237811	1e-140	AJ237811.1 Arabidopsis thaliana mRNA for putative DNA binding protein (partial).
GenBank	BT003328	1e-140	BT003328.1 Arabidopsis thaliana putative DOF zinc finger protein (At2g46590) mRNA, complete cds.
GenBank	BT008842	1e-140	BT008842.1 Arabidopsis thaliana At2g46590 mRNA, complete cds.
GenBank	CP002685	1e-140	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434986.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
Refseq	XP_018437892.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
Swissprot	Q9ZPY0	1e-144	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A3P5YNV7	1e-170	A0A3P5YNV7_BRACM; Uncharacterized protein
TrEMBL	M4CJZ1	1e-170	M4CJZ1_BRARP; Uncharacterized protein
STRING	Bra004525.1-P	1e-171	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	1e-129	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]