PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00326.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 503aa    MW: 56129.7 Da    PI: 7.7152
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00326.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.23.4e-16741135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Rsa1.0_00326.1_g00012.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                             ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.9E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-11546No hitNo description
CDDcd002021.05E-15651No hitNo description
PfamPF003205.8E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-12740IPR013088Zinc finger, NHR/GATA-type
PfamPF139191.4E-9270371IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHS RADAEVNQDH  60
HHHRYQRMKS ISESYKNKET KKRKAIQEPV FEFNYGFKKA VVEEDASNRS SSGSAVSNSE  120
SCAAQFSSAD GSSELTGPSR SNGWDTTVPC KRRTCVGRPK TSSVEKLTQD LYNILQEQQP  180
SCPSEDDLLF ENEMLSMVSV EIGHGSVLMR NPHSFAREEE SEEASSLSSV ENKSSISDAY  240
SHSVKRAEIG AERGSVSVGE TVKEEQLKRT KSQTGRVHVL GGHSSPLCSI DLKDVFNFDE  300
FIEQFTEEEQ KKLMRLLPQI DSVNLPDSLR MMFESAQFKE NFTLFQKLIS EGVFEMPSTT  360
TSGAKLEDKR SLKKLALSDF RKSRLVESYN LLKEGEKGSV TTTSRSSNPN DVHNKHIVTI  420
KRRCENQTQS KSESRGLMRS PKSVTKMKAI HESNGSCFRP RSLASVFAQE SGYEGNCSSD  480
QDLLLLDLPS NGSFPQAELI HQL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00326.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532400.0AK353240.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448301.10.0PREDICTED: GATA transcription factor 26
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLM4FGD90.0M4FGD9_BRARP; Uncharacterized protein
STRINGBra040167.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26