PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00331.1_g00024.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 155aa    MW: 17374.8 Da    PI: 10.378
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00331.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.11e-0890133155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV+++k++g       d      + k+++lg+f+ta  Aa+a ++a+ k +g
  Rsa1.0_00331.1_g00024.1  90 SQYRGVTFYKRTGM------D------CgKQVYLGRFDTAHAAARAFDRAAIKCRG 133
                              78*********999......5......56**********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-1077141IPR001471AP2/ERF domain
PROSITE profilePS5103211.81281141IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1090141IPR016177DNA-binding domain
SMARTSM003804.1E-1891147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MRSTETMTFE LLRDFCNGVR YGFIVLNPIK SDAHAVFFNA LLASARRHLR GSSSRSLMDL  60
SFDTKSVSPV PAAAPAEVRK SRRGPRSRSS QYRGVTFYKR TGMDCGKQVY LGRFDTAHAA  120
ARAFDRAAIK CRGVDAAINF TIGDYEEDMQ QFFLV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00331.1_g00024.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623273.16e-34PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9LVG21e-25TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A0D3AS224e-33A0A0D3AS22_BRAOL; Uncharacterized protein
TrEMBLA0A0D3B7871e-32A0A0D3B787_BRAOL; Uncharacterized protein
STRINGBo2g097480.17e-34(Brassica oleracea)
STRINGBo3g040110.12e-33(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1938833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.15e-15related to AP2.7