PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00333.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 1260aa    MW: 141255 Da    PI: 5.9831
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00333.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.8e-1911381231498
                               E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3    4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86  
                               +++++++ k++ l+lp + + ++  +++++ ++ +l +++g+sW+v l++++++g y++t+GW++F  +n+ + g++++F ++g
  Rsa1.0_00333.1_g00003.1 1138 AEVTASNKKEDKLSLPVQAT-NCtALNQQC-QETILVNKDGKSWKVSLRFSQSGGNYYITRGWRKFTVDNRCEIGEVIIFNVVG 1219
                               5678999999********98.554777655.69999************************************************ PP

                               SSEE..EEEEE- CS
                       B3   87 rsefelvvkvfr 98  
                               + ++++++ v+ 
  Rsa1.0_00333.1_g00003.1 1220 DGKTTPLLCVCP 1231
                               *9999*999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031081.9E-9433496IPR004332Transposase, MuDR, plant
PfamPF105517.7E-22609700IPR018289MULE transposase domain
PfamPF044342.4E-4852881IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.483852884IPR007527Zinc finger, SWIM-type
SMARTSM005753.2E-6859886IPR006564Zinc finger, PMZ-type
SMARTSM010191.5E-810091095IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-1210191097IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-810211092No hitNo description
Gene3DG3DSA:2.40.330.102.2E-1410581103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.19210581095IPR003340B3 DNA binding domain
CDDcd100178.64E-1311351215No hitNo description
SuperFamilySSF1019367.65E-1611351224IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.22511351233IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-1611351234IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-1611361233IPR003340B3 DNA binding domain
PfamPF023626.2E-1811381231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1260 aa     Download sequence    Send to blast
MGTLVIIAQG VWEKSPAGVW MFVENLATER ETVLINPKDR LEGLVEMIRI RLDLGVLTPV  60
VLTYQLPEWM LDPEGPRTPP MTLATNNDVE TMLSVTEYMT DKVMYVTSGP ELVAKYQFLC  120
RTPFKIGGRS FLGEGVTEEQ HHQAIKDLVG GHPIICSKSM LEIMFNEPQL LIVYRVALEI  180
ELVYAPTPQQ RDEFPRFTVD DAITILEGEN PYNNGENINV QSEEVLQGEP MDMEQLQREF  240
PNIRAPTTGS HGEPLDVQPL RTLGPYEPLR EDESAEEQAY WNGVFEAERI HQVNVSQAPR  300
HTNGALGLPI GPNQRVTAPP TPNTVLVGDE EYASYTGSSD GLNDGQNNNG IVTGNANTED  360
LINITDGVAE GAEPAPVENG STATRRSNNG PNLDLTLGIG INNNHGSDEI IDIKDSDSEA  420
DGESGVKNND VDELYEGMVF RNRAHFKHHI ALYALHKKFR LRNTRSSPQG IVMRCISGTC  480
LWRVYATKIK NVDKYEIRKM FLDHTCSVDD RIGYERQATH GLIGEVMRCR YGGNGGAPKP  540
NEIMQVMLGE HDVKISYWKA WRSREIALDN SQGSSSGSYN LIPNYLNQLV VANPGTISHL  600
ETNFQTGIVD GTHLRGKYGG CLLTASAQDG NYQVYPLAIG VVDSENDKAY EWFFKMLLQF  660
IPNEEGVVFV SDRHSSIYYA ISQVYPESRH CACILHLKRN IRTFFKNKHL SYLVGKAARA  720
YRLPEFYGVF NEIKMMNASC AEYLIGIGFE HWARVHFKGN RYNIMTSNIA ESWNAVLREA  780
RDYPILPLLE FIRSKLMNWF SERRSGNEDE NNLFSRRVRE ILDFNFQQSG GMIASKINRV  840
EYEVKDKDGG SFHVNLRNKS CSCNVFQSLM IPCSHAICAC TKGKVRVETL VSQVYSVQCL  900
AAAYKEEIFP VSKMSSEPFE ESESVAFEVL PPVTRRPPGR PRKSRILSAG EIRLQGKSIF  960
AAVVREVDIT EQHASHLDEE DEEKIGRIVG IIRLNNGRPN SSLSYEPTFF STSPSRIRDS  1020
PPFFVKHVQG SYDHIKTAKL RTDASDNTVL VKIDGMKLTE GWKDFAVAQD LRIGDILIFR  1080
HEGDMVFHVT PFGPSCCDIQ YTAPSSGDIN NDGHDHTTYN TGGTGSISSL TFDYCFLAEV  1140
TASNKKEDKL SLPVQATNCT ALNQQCQETI LVNKDGKSWK VSLRFSQSGG NYYITRGWRK  1200
FTVDNRCEIG EVIIFNVVGD GKTTPLLCVC PERKADSEFL GKDKHLRRKS GDIASTSRIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00333.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A397XWV10.0A0A397XWV1_BRACM; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-41B3 family protein