PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00335.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 219aa    MW: 25363.8 Da    PI: 7.4484
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00335.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.7e-2078132256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +k++++t+eql  Le+ F+++ +++ +++ +L+k+l+L+ rqV vWFqNrRa+++
  Rsa1.0_00335.1_g00021.1  78 KKKQKLTTEQLASLEQSFQEDIKLDSDRKVKLSKELHLEPRQVAVWFQNRRARWR 132
                              78999*************************************************9 PP
2HD-ZIP_I/II110.31.3e-3578166189
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk++l++eq+++LE+sF+e+ kL+++rKv+l++eL+l+prqvavWFqnrRAR++ k+lE+ y++L ++yda++++n++L++ev +
  Rsa1.0_00335.1_g00021.1  78 KKKQKLTTEQLASLEQSFQEDIKLDSDRKVKLSKELHLEPRQVAVWFQNRRARWRVKHLEESYNSLMKEYDAVSRQNQMLHDEVMK 163
                              59************************************************************************************ PP

              HD-ZIP_I/II  87 Lre 89 
                              Lr 
  Rsa1.0_00335.1_g00021.1 164 LRG 166
                              *95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-1867133IPR009057Homeodomain-like
PROSITE profilePS5007117.13574134IPR001356Homeobox domain
SMARTSM003894.3E-1876138IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-1977139IPR009057Homeodomain-like
CDDcd000863.38E-1678135No hitNo description
PfamPF000464.5E-1778132IPR001356Homeobox domain
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEWSTKSNVE NMRAAFMPLQ WLESNSSSSL QNFSYDPYAG NSFTPVLTQT GPVLSVPESP  60
EKITNACQCP SIDDQMIKKK QKLTTEQLAS LEQSFQEDIK LDSDRKVKLS KELHLEPRQV  120
AVWFQNRRAR WRVKHLEESY NSLMKEYDAV SRQNQMLHDE VMKLRGIILK DHLMKRQINL  180
NNNQMAGGSQ IYGTDQYNNP MCVASTCWPP LSSEQPYPW
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00335.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443240.11e-160PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-91ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A078HW141e-147A0A078HW14_BRANA; BnaC04g00850D protein
TrEMBLA0A3P6EHA71e-147A0A3P6EHA7_BRAOL; Uncharacterized protein
STRINGBo9g181710.11e-147(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-91homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]