PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00339.1_g00013.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

S1Fa-like

Protein Properties

Length: 126aa MW: 14120.7 Da PI: 10.8247

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00339.1_g00013.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	130.5	4.5e-41	3	68	3	68
S1FA 3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavP 68 ++k e+kGlnPGlivllv+ggll++flvgn+ily+yaqknlP rkkkPvskkk+k+eklkqGv+vP Rsa1.0_00339.1_g00013.1 3 QGKLESKGLNPGLIVLLVIGGLLVTFLVGNFILYTYAQKNLPQRKKKPVSKKKMKKEKLKQGVQVP 68 6789*************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.1E-36	6	68	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MRQGKLESKG LNPGLIVLLV IGGLLVTFLV GNFILYTYAQ KNLPQRKKKP VSKKKMKKEK 60 LKQGVQVPLH PSDGPSDLVI SFVMLWLSMK PRGLLGSSSE ETPRDVLRFE NQMNLNGPRE 120 ETQSGF

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00339.1_g00013.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884751.2	1e-20	DNA-binding protein S1FA3
Refseq	XP_006298914.1	1e-20	DNA-binding protein S1FA3
Refseq	XP_009146906.1	1e-20	PREDICTED: DNA-binding protein S1FA3
Refseq	XP_022575570.1	1e-20	DNA-binding protein S1FA3
Swissprot	Q42337	8e-16	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A0A1J3J4X3	3e-22	A0A1J3J4X3_NOCCA; DNA-binding protein S1FA2
STRING	Cagra.2515s0064.1.p	8e-35	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2823	27	69