PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00339.1_g00039.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 576aa    MW: 63144.3 Da    PI: 6.6156
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00339.1_g00039.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix637e-20161247186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                              +W++  + +L++a++++ ++l+rg+l++ +We+v++ +  r +++ +s +qCk+k++nl+kryk ++++++++  +s s++p+f++
  Rsa1.0_00339.1_g00039.1 161 EWSDAAITCLLDAYSDKFTQLNRGNLRGRDWEDVAATVseRCEKLIKSVEQCKNKIDNLKKRYKLERHRMSSG-GTSASHWPWFKK 245
                              5*************************************77788999**************************9.666779****** PP

                 trihelix  85 le 86 
                              +e
  Rsa1.0_00339.1_g00039.1 246 ME 247
                              *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-21159249No hitNo description
Gene3DG3DSA:3.40.1160.107.5E-54294511IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536336.28E-43302511IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.80E-111304569No hitNo description
PfamPF006961.4E-19305511IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MASCDDDFSL LGEDQSNPNQ HHHHHHQVLH HAPYAPRRFA PKLSNQIHVP HHQSNGDEDE  60
DHHHDVVASS AFHSVNPFST DESSNPYDNN NNNNAAVDGD EDLDANRSRI GGVRLEKRQS  120
QEELSDGGTT NGGETTPYGS FKRPRTSSSS AAGEYRKDRE EWSDAAITCL LDAYSDKFTQ  180
LNRGNLRGRD WEDVAATVSE RCEKLIKSVE QCKNKIDNLK KRYKLERHRM SSGGTSASHW  240
PWFKKMEEIV GNSMTTKGAS DEDRSGSSLG NAAKPARRYP LVTYSPGVQI NNVKSKATSN  300
PRWRRVVLKI SGAALACTGP NNIDPKIVGL IAREVAMACR LGVEVAIVVG SRNLFCGGTW  360
ITATGLDRTT AYHISMMASV MNSVLLQSSL EKMGVQARLQ TGIAVQGVGE PYNRQRATRH  420
LDKGRVVIFG GIGATLGNPL LSSDAAAALR AIEINAEAMV KGTNVEGVYD CHSQDSNATF  480
EHITFHDLAS RGLTTMDTMA LNFCEENSIP VNRLFEMAPF DDYLAHENLE CNVTDPYSMG  540
EKTVVVFNFL EAGNITKALC GEQVGTLIDR TGRGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-492955181221Uridylate kinase
3ek5_B1e-492955181221Uridylate kinase
3ek5_C1e-492955181221Uridylate kinase
3ek5_D1e-492955181221Uridylate kinase
3ek5_E1e-492955181221Uridylate kinase
3ek5_F1e-492955181221Uridylate kinase
3ek6_A1e-492955181221Uridylate kinase
3ek6_B1e-492955181221Uridylate kinase
3ek6_C1e-492955181221Uridylate kinase
3ek6_D1e-492955181221Uridylate kinase
3ek6_E1e-492955181221Uridylate kinase
3ek6_F1e-492955181221Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00339.1_g00039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485504.10.0PREDICTED: uncharacterized protein LOC108856238
TrEMBLA0A0D3CLJ40.0A0A0D3CLJ4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FGQ40.0A0A3P6FGQ4_BRAOL; Uncharacterized protein
STRINGBo5g137800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein