PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00341.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 528aa    MW: 57809.2 Da    PI: 6.5175
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00341.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.5e-29169225259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgynWrKYGqK vkgse+prsYY+Ct+++C+vkkk+ers+ +++++e++Y   Hnh+
  Rsa1.0_00341.1_g00007.1 169 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPKCEVKKKIERSR-EGHITEMIYVKAHNHT 225
                              8****************************************.***************8 PP
2WRKY101.55.1e-32334391259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d + v +tY g+Hnhe
  Rsa1.0_00341.1_g00007.1 334 EDGYRWRKYGQKVVKGNPNPRSYYKCTSNGCTVTKHVERASNDLTSVLTTYIGKHNHE 391
                              8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.378163227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-26164227IPR003657WRKY domain
SuperFamilySSF1182902.62E-23167227IPR003657WRKY domain
SMARTSM007742.6E-29168226IPR003657WRKY domain
PfamPF031063.7E-22169224IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-34318393IPR003657WRKY domain
SuperFamilySSF1182907.19E-28325393IPR003657WRKY domain
PROSITE profilePS5081135.29328393IPR003657WRKY domain
SMARTSM007744.0E-36333392IPR003657WRKY domain
PfamPF031062.5E-24334391IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MPGFDGNFAV MGQWLDPSPN HKKRSKAELD REVSLEDMEN FMQTSTQEKP WYSRNGLSER  60
IAARTGFKIP NLKTQSIFPS PCLAISSPGV RPATLLESPV FLSNPLISPT TGKLSSLTLD  120
ETKDEFTDDI ATSLALSLDP TKIGSEPDES QAHDSGLGDS MRSSGAAEDD GYNWRKYGQK  180
LVKGSEYPRS YYKCTHPKCE VKKKIERSRE GHITEMIYVK AHNHTKPPPT NRRSGTGPSG  240
AGDDMQIDGT EQAGFAGSMQ VQSGTQFGYG GVATHAFSKY EEDSKSHMSV SLGYEGQEDE  300
SEPKKRKLEA SGSTRGTRQP KVVVKTTSDI DILEDGYRWR KYGQKVVKGN PNPRSYYKCT  360
SNGCTVTKHV ERASNDLTSV LTTYIGKHNH EVPAARNSSQ VSPGSSGTLQ GGLATQARNE  420
NEHYPMPHSS SEGLVTANSS LFDFHPQLRP PSGFSVYYAD QAELSDISVS GLAIGQERFT  480
SLVDPAIGDP AGLMLQLASE PKVEQVSQQE LGYSWSSLID IMSRLQQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-31169394878Probable WRKY transcription factor 4
2lex_A2e-31169394878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00341.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300510.0KF430051.1 Brassica rapa WRKY transcription factor 34 (WRKY34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482319.10.0PREDICTED: probable WRKY transcription factor 34
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A3P5ZTG80.0A0A3P5ZTG8_BRACM; Uncharacterized protein
STRINGBo7g110920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]