PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00341.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 147aa    MW: 16627.8 Da    PI: 8.6531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00341.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-1575124154
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                              +++kGVr ++ +g+W AeI+dp     +  +r +lg+f ta++Aa+a++  + kl 
  Rsa1.0_00341.1_g00012.1  75 KKHKGVRKKP-SGKWSAEIWDP-----SlqRRRWLGTFPTAKMAAEAYDDEATKLV 124
                              589****999.7*********9.....445*******************9888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.84876137IPR001471AP2/ERF domain
SMARTSM003801.6E-2176140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1976128IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1476128IPR016177DNA-binding domain
PRINTSPR003675.3E-67788IPR001471AP2/ERF domain
CDDcd000182.49E-2079129No hitNo description
PRINTSPR003675.3E-699115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDHKPPRLTR DQEHVIMVSA LRQVISNNRG DTSSSNWVAF EALHRPLDAG PCPLCSTTGC  60
YGCAFPEHEE IKKEKKHKGV RKKPSGKWSA EIWDPSLQRR RWLGTFPTAK MAAEAYDDEA  120
TKLVKRKAAR SDTMNGEEPT IHREDDG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00341.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608811e-43AY560881.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g20350) mRNA, complete cds.
GenBankBT0246981e-43BT024698.1 Arabidopsis thaliana At2g20350 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481647.11e-108PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ9FGC94e-63EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLA0A0D3DGB53e-80A0A0D3DGB5_BRAOL; Uncharacterized protein
STRINGBo7g111070.11e-78(Brassica oleracea)
STRINGBo7g111140.14e-81(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.14e-51ERF family protein