PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00341.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 144aa    MW: 16177.4 Da    PI: 9.1107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00341.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-1684133154
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                              +++kGVr+++ +g+W AeI+dp     +  +r +lg+f ta++Aa+ ++ a+ kl 
  Rsa1.0_00341.1_g00013.1  84 KKHKGVRQKP-SGKWSAEIWDP-----NlqRRRWLGTFPTAKMAAEVYDDAAAKLV 133
                              589*****99.7*********9.....445999*******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-2085137IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1485137IPR016177DNA-binding domain
SMARTSM003801.5E-1985144IPR001471AP2/ERF domain
PfamPF008471.8E-885133IPR001471AP2/ERF domain
PROSITE profilePS5103218.04485143IPR001471AP2/ERF domain
PRINTSPR003671.6E-58697IPR001471AP2/ERF domain
CDDcd000181.50E-2188137No hitNo description
PRINTSPR003671.6E-5108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MDHSENIPSC DQKPSRLTRD QEHVIMVSAL RQVLSHVQGD TSSSNSVACE ALHQPLDAGP  60
CPLCGIIGCY GCAFPRREEI KKEKKHKGVR QKPSGKWSAE IWDPNLQRRR WLGTFPTAKM  120
AAEVYDDAAA KLVKRKAERS DTRH
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00341.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137617.11e-88PREDICTED: ethylene-responsive transcription factor ERF120-like
RefseqXP_013741557.11e-88ethylene-responsive transcription factor ERF120-like
SwissprotQ9SK672e-58EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLA0A397L4F02e-87A0A397L4F0_BRACM; Uncharacterized protein
TrEMBLA0A3P6A8C93e-87A0A3P6A8C9_BRACM; Uncharacterized protein
TrEMBLM4DRE43e-87M4DRE4_BRARP; Uncharacterized protein
STRINGBra019087.1-P4e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.11e-52ERF family protein