PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00343.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 279aa    MW: 30941.6 Da    PI: 6.8039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00343.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.98.1e-16139176243
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAa 43 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa
  Rsa1.0_00343.1_g00003.1 139 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAA 176
                              59******9.**********955...5**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.44E-22138177No hitNo description
PROSITE profilePS5103216.45139176IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-14139178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-21139177IPR001471AP2/ERF domain
SMARTSM003802.7E-15139204IPR001471AP2/ERF domain
PfamPF008475.1E-10140177IPR001471AP2/ERF domain
PRINTSPR003679.9E-11140151IPR001471AP2/ERF domain
PRINTSPR003679.9E-11162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEAAMNMYSS RTVHQSDSFG GGELMEALVP FIKIVSNSSP PPPASASAFI NPAASAFPLP  60
TFPGYNPVDY SAFMTQPFTY GSDPHQTGSS LIGLNNLSSS QIHQIQSQIH HNHPLLRPKP  120
LLMKQPGVAG PRFPAAAKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD TAEEAALXSH  180
IGEYKPLHST VDAKLEAICR SMAETPQKQD KASRKRAKKA EPDVSEKVEL AAEEFVESAG  240
SSPLSELTFA DAEEQPRWNE TFSLEKYPSY EIDWDSILS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00343.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894143e-46AC189414.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061K11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472048.11e-179PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E41e-109RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A078GNU41e-150A0A078GNU4_BRANA; BnaA02g18720D protein
TrEMBLM4CVU61e-150M4CVU6_BRARP; Uncharacterized protein
STRINGBra008343.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-88related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]