PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00344.1_g00022.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27851.9 Da    PI: 9.5766
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00344.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.68.9e-30959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             kri+n++nrqvtfskRrng++KKA+EL +LCdaev +iifsstg+lye+ss
  Rsa1.0_00344.1_g00022.1  9 KRIDNSTNRQVTFSKRRNGLMKKAKELAILCDAEVGLIIFSSTGRLYEFSS 59
                             79***********************************************96 PP
2K-box85.61e-2879170898
                    K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                              + +++++ + +q+e+a Lk++++nLq+ +R+++Ge+L+ Ls+++L++Le+qLe sl+ +R kK++llle+i+el +k   +++en+
  Rsa1.0_00344.1_g00022.1  79 EiNSATEIKFWQTEAAILKRQLHNLQEDHRQMMGEQLSGLSVEDLKKLEHQLELSLRDVRMKKDQLLLEEIHELTRKGILVHQENM 164
                              24789999****************************************************************************** PP

                    K-box  93 aLrkkl 98 
                              +L+kk+
  Rsa1.0_00344.1_g00022.1 165 DLHKKV 170
                              ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.772161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-33278IPR002100Transcription factor, MADS-box
CDDcd002656.40E-44274No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-29323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-2583170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.45586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIAIKR IDNSTNRQVT FSKRRNGLMK KAKELAILCD AEVGLIIFSS TGRLYEFSSS  60
SMKSVIERYN EVKGETNSEI NSATEIKFWQ TEAAILKRQL HNLQEDHRQM MGEQLSGLSV  120
EDLKKLEHQL ELSLRDVRMK KDQLLLEEIH ELTRKGILVH QENMDLHKKV NLMQQQNMEL  180
YKKVSEVESV KSADKSSLLT NGLRMRDNSS EHVHLQLSQP LQHDETTHSK ALRLSYFSFI  240
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-23183187MEF2C
5f28_B7e-23183187MEF2C
5f28_C7e-23183187MEF2C
5f28_D7e-23183187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00344.1_g00022.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468382.11e-171PREDICTED: agamous-like MADS-box protein AGL16 isoform X1
SwissprotA2RVQ51e-139AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A068F6051e-144A0A068F605_BRANA; Agamous-like protein 16
TrEMBLA0A398APE61e-144A0A398APE6_BRACM; Uncharacterized protein
STRINGBo1g007520.11e-144(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-141AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]