PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00350.1_g00017.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 310aa    MW: 34580.1 Da    PI: 9.9742
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00350.1_g00017.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573124.16.7e-39106203297
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehd 85 
                               fqr+ws eDei++LqG+i+fk+ktg+sp+dd +a+y++vkks+sf+v+k+q++eKir LKkKf+ +  k  +k+gk+psfsk+hd
  Rsa1.0_00350.1_g00017.1 106 SFQRVWSGEDEIAVLQGIINFKNKTGSSPYDDKNALYDMVKKSVSFDVTKTQFMEKIRALKKKFESNLGKgkKKKGKDPSFSKAHD 191
                              79*****************************************************************99877899*********** PP

                   DUF573  86 qkifelskkiWg 97 
                              + +f+l+k +Wg
  Rsa1.0_00350.1_g00017.1 192 RRAFDLAKLVWG 203
                              ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.4E-33107203IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSGKLLKKLE DPPMASSSSE EENEDTLANA SSPEEEATDS ESEAEPVANP PVKPPADSKK  60
VETSSKPETK KRSSDKNEGK AKRAKRVSGE DNKKKSTVEE ETKKNSFQRV WSGEDEIAVL  120
QGIINFKNKT GSSPYDDKNA LYDMVKKSVS FDVTKTQFME KIRALKKKFE SNLGKGKKKK  180
GKDPSFSKAH DRRAFDLAKL VWGDNGIMAL ESSSSAGKSR KVEPSVKKKE EEPAVVMKQE  240
FVSVVESVAR FGVDDIAAKK CWSRLSSEDK ERFEKQWKAL QVKEFKFYAQ KSGFIHEVVT  300
KMAEASGPKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165179KKKFESNLGKGKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00350.1_g00017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481209.10.0PREDICTED: probable transcription factor At1g11510
SwissprotC0SUU61e-67STKLA_ARATH; Probable transcription factor At1g11510
TrEMBLA0A3P6CXR11e-146A0A3P6CXR1_BRAOL; Uncharacterized protein
STRINGBo4g143830.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.14e-42DNA-binding storekeeper protein-related transcriptional regulator