PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00352.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 257aa    MW: 27757.2 Da    PI: 8.5997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00352.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000266283223
                             EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                             +C+ Cg+ F ++  L+ H+r+H
  Rsa1.0_00352.1_g00011.1 62 PCKVCGRKFWSSKALHGHMRSH 83
                             5********************9 PP
2zf-C2H211.40.00099131150221
                              EETTTTEEESSHHHHHHHHH CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                              +C+ C+k+F ++  L  Hi 
  Rsa1.0_00352.1_g00011.1 131 ECEGCKKMFESRQALDGHIC 150
                              6***************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0676183IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7026188IPR007087Zinc finger, C2H2
SuperFamilySSF576675.58E-66283No hitNo description
PfamPF139123.4E-56385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-46383IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.58E-6125149No hitNo description
SMARTSM00355230130150IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.36E-6188215No hitNo description
PfamPF139123.8E-12190213IPR007087Zinc finger, C2H2
SMARTSM003550.027190212IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369190212IPR007087Zinc finger, C2H2
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MNNNIELNLT LNPSSAPPNE TPPSHNQTPR RKRTRRTSNN ETGSSSSPRP KPDPDAPLIT  60
EPCKVCGRKF WSSKALHGHM RSHPERQWRG INPPPNHQPT VTAAPPVSVT AEGGQVLAIA  120
STTGSSAVGV ECEGCKKMFE SRQALDGHIC SAILNLNEDP PPSPPPPPPP PPQEVVDESR  180
SVMLASRMNH RCDICSKVFY SGQALGGHMR CHWVKDKEKK QASTGIDLNV PASSTNLQPG  240
SSSDAVPESS LDLKLRL
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00352.1_g00011.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438160.11e-167PREDICTED: zinc finger protein ZAT2
SwissprotQ9SIJ01e-63ZAT2_ARATH; Zinc finger protein ZAT2
TrEMBLA0A397YPB21e-128A0A397YPB2_BRACM; Uncharacterized protein
STRINGBra002027.1-P2e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2031545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.18e-57C2H2-like zinc finger protein