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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00353.1_g00002.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 280aa MW: 31528.7 Da PI: 9.7247 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00353.1_g00002.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 295.5 | 2.1e-90 | 1 | 280 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssia.erdaki....rernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81
md+dg +rn+gyye++ +++ lg+ql+ s+ + ++k+ + n +++++++ + + + n +rd +
Rsa1.0_00353.1_g00002.1 1 MDEDGLSNRNWGYYEQS-QFRPSLGFQLIPSMVnNLNEKQflnpQ--NPNFITTNNNGYCGGSSS-SSS------NIMSFPRDYTA 76
9***************9.***********9887466777777444..444444443333222222.122......22234555554 PP
GAGA_bind 82 lalllvenslasalpvgvqvlsgtksidslqq.lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166
+++ s + +++k ++l + +++ l d++ + ++ l + p e e+ k+++ + ++r+++pk+kk++k
Rsa1.0_00353.1_g00002.1 77 SDAPFMSYS-------WLNQHRDSKFFNNLPNpSNHHTLLDDPRA-QPMQLL-QVPKPEVDESLKRRQCSGGGERGADPKAKKERK 153
444444433.......23333455555554444444445555544.233333.33334444455555666678999********99 PP
GAGA_bind 167 kkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252
k+ + +++++++ +ksi++v+ngv++D++ lPvPvCsCtG ++qCY+WG+GGWqSaCCtt++S+yPLP++tk+rg
Rsa1.0_00353.1_g00002.1 154 LKD--------SVVPRMQRERSPLRKSIEMVINGVTIDIGCLPVPVCSCTGFSQQCYRWGCGGWQSACCTTNVSMYPLPMNTKKRG 231
999........2233444556789************************************************************** PP
GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
aRiagrKmSqgafkk+LekL+++G+d+snp+DLk+hWAkHGtnkfvtir
Rsa1.0_00353.1_g00002.1 232 ARIAGRKMSQGAFKKVLEKLSGDGFDFSNPIDLKSHWAKHGTNKFVTIR 280
************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDEDGLSNRN WGYYEQSQFR PSLGFQLIPS MVNNLNEKQF LNPQNPNFIT TNNNGYCGGS 60
SSSSSNIMSF PRDYTASDAP FMSYSWLNQH RDSKFFNNLP NPSNHHTLLD DPRAQPMQLL 120
QVPKPEVDES LKRRQCSGGG ERGADPKAKK ERKLKDSVVP RMQRERSPLR KSIEMVINGV 180
TIDIGCLPVP VCSCTGFSQQ CYRWGCGGWQ SACCTTNVSM YPLPMNTKKR GARIAGRKMS 240
QGAFKKVLEK LSGDGFDFSN PIDLKSHWAK HGTNKFVTIR
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
