PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00355.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 510aa    MW: 58153.6 Da    PI: 6.3974
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00355.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3360.62.9e-110373891354
                              XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 
                              eel+++ wkd+++lk+lke+ k+ l+++ +        k  e ++++ m +aQDgiLkYM k +e cnaqGfvYg + e+gk+v+g
  Rsa1.0_00355.1_g00004.1  37 EELERKIWKDKQRLKQLKEMCKNGLGKRLS--------KQPEDSNKRMMYQAQDGILKYMSKAIERCNAQGFVYGVVFENGKTVTG 114
                              8**************999999997744443........567899****************************************** PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HH CS
                     EIN3  87 asdsLraWWkekvefdrngpaaiskyqaknlilsgesslqt..ersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvep 170
                              +sd+Lr+WWk+ v+fdrngpaai k+q + +++s +s+ +    ++s+ h+l elqDTtlg+LLsalm hc+ppqrr+ple+gv+p
  Rsa1.0_00355.1_g00004.1 115 SSDNLREWWKDRVRFDRNGPAAILKHQRQINLSSYGSEIEPvgGGESTAHKLLELQDTTLGALLSALMPHCKPPQRRYPLERGVPP 200
                              ****************************999999999985523567889************************************* PP

                              HH---S--HHHHHHT--TT--...-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTT CS
                     EIN3 171 PWWPtGkelwwgelglskdqg..tppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqee 254
                              PWWPtG+e+ww+ l l+ d +  +p ykkphdlkk+ kv+vL a ikhm+ +ie i +l+r+s++lq+km+++e + +l+ ln+e+
  Rsa1.0_00355.1_g00004.1 201 PWWPTGEEDWWNDLPLPVDCRglPPHYKKPHDLKKVLKVGVLIAIIKHMASDIESIPKLVRRSRSLQEKMTSREGALWLAALNREK 286
                              *************************************************************************************9 PP

                              T-S--XXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXX.XXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXX...... CS
                     EIN3 255 kecatvsahssslrkqspkvtlsceqkedve.......gkkeskikhvqavktta....gfpvvrkrkkkpsesakvsskevsrtc 329
                              + ++  +  + +++ +s++ +l  +++ dv          ke+     q          +  v++krk  ++e     + ++  tc
  Rsa1.0_00355.1_g00004.1 287 SNVDPSQYPPLTFSGESNSNVLGASAETDVLfhesadyDVKEPY---HQH----VpevgNNYVNNKRK-FEGELGLLFNPRTNLTC 364
                              98865555555777788888888888888884433221111222...222....13343667777777.66777777777789*** PP

                              XXXXXXX.XXXXXXXXXXXXXXXXX CS
                     EIN3 330 qssqfrgsetelifadknsisqney 354
                              ++s +++s+++++f+dk  ++++++
  Rsa1.0_00355.1_g00004.1 365 ENSYCPYSQPHMGFQDKVLRENHQM 389
                              ***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.7E-10737286No hitNo description
Gene3DG3DSA:1.10.3180.104.9E-58160289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.14E-51163287IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MFNNNTEMFC GLVSNPERDV CPASLTALCD DQEMEIEELE RKIWKDKQRL KQLKEMCKNG  60
LGKRLSKQPE DSNKRMMYQA QDGILKYMSK AIERCNAQGF VYGVVFENGK TVTGSSDNLR  120
EWWKDRVRFD RNGPAAILKH QRQINLSSYG SEIEPVGGGE STAHKLLELQ DTTLGALLSA  180
LMPHCKPPQR RYPLERGVPP PWWPTGEEDW WNDLPLPVDC RGLPPHYKKP HDLKKVLKVG  240
VLIAIIKHMA SDIESIPKLV RRSRSLQEKM TSREGALWLA ALNREKSNVD PSQYPPLTFS  300
GESNSNVLGA SAETDVLFHE SADYDVKEPY HQHVPEVGNN YVNNKRKFEG ELGLLFNPRT  360
NLTCENSYCP YSQPHMGFQD KVLRENHQMT CPYKAISFYQ PNKPLGIPLS FMTPYQVEMQ  420
QQQQVQNIQD QFNLSNTLYR PTAAERGDNN NDYLSDHQFG LVDNSCPSTS VMNHNHGLVL  480
PANFNGDAET VGMENNQQNQ QEGLPMPWIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-511612871125Protein ETHYLENE INSENSITIVE 3
4zds_B2e-511612871125Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00355.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469819.10.0PREDICTED: LOW QUALITY PROTEIN: ETHYLENE INSENSITIVE 3-like 2 protein
SwissprotO231150.0EIL2_ARATH; ETHYLENE INSENSITIVE 3-like 2 protein
TrEMBLA0A0D3AKB70.0A0A0D3AKB7_BRAOL; Uncharacterized protein
STRINGBo2g023430.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147191621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21120.10.0ETHYLENE-INSENSITIVE3-like 2