PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00358.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 104aa    MW: 11157 Da    PI: 10.079
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00358.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26069.38.1e-221878160
                   DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamss 60
                             +C aCk+lrrkC+++Cv+apyf +eq + +fa++h++FGasn +k+l +lp ++r da+++
  Rsa1.0_00358.1_g00015.1 18 PCGACKFLRRKCVRGCVFAPYFDSEQgTVSFAAIHRVFGASNTSKMLLRLPLHKRLDAVAT 78
                             7***********************9988***************************888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.75517104IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-201878IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MMTENLNGGG RGEGGEGPCG ACKFLRRKCV RGCVFAPYFD SEQGTVSFAA IHRVFGASNT  60
SKMLLRLPLH KRLDAVATSV TRLCLSSVIL FTAALAISSL FNTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-221478770LOB family transfactor Ramosa2.1
5ly0_B2e-221478770LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00358.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894984e-95AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436454.12e-41PREDICTED: LOB domain-containing protein 19-like
RefseqXP_018436455.12e-41PREDICTED: LOB domain-containing protein 19-like
SwissprotO221321e-31LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A078J3M75e-35A0A078J3M7_BRANA; BnaC04g56950D protein
TrEMBLA0A0D3C6D84e-35A0A0D3C6D8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D1495e-35A0A3P6D149_BRAOL; Uncharacterized protein
STRINGBo4g195510.16e-36(Brassica oleracea)
STRINGA0A087H5D24e-35(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3777222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.14e-34LOB domain-containing protein 19