PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00362.1_g00029.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 595aa MW: 67854.5 Da PI: 7.1589

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00362.1_g00029.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.2	3.3e-16	99	180	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdql 85 W+ +evlaL+++r+ +e+++ + We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++ + + ++ ++ ++++f+++ Rsa1.0_00362.1_g00029.1 99 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNTNAHhmSNYNKGNYRLFSEV 179 ******************998.....9***************************9999988877773446666678888776 PP trihelix 86 e 86 + Rsa1.0_00362.1_g00029.1 180 D 180 5 PP
2	trihelix	99.3	3.2e-31	447	539	1	86
trihelix 1 rWtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 rW+++evlaLi++rr++ + ++ + plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+t Rsa1.0_00362.1_g00029.1 447 RWPRDEVLALINIRRSISSMNDdiplpspsSSTKVVPLWERISKKMLEIGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRT 531 8************655444411133322346889**************************************8.9* PP trihelix 79 cpyfdqle 86 cpyf+ql+ Rsa1.0_00362.1_g00029.1 532 CPYFHQLT 539 ****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.0E-11	97	163	No hit	No description
PROSITE profile	PS50090	5.482	98	150	IPR017877	Myb-like domain
CDD	cd12203	8.33E-26	446	519	No hit	No description
Pfam	PF13837	2.7E-19	446	540	No hit	No description
PROSITE profile	PS50090	7.015	447	512	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence Send to blast
MFDGGVPEQI HRFIASAQPP PPLHPHQPAA ERSLPFPASF ATFSTDHQAN MLNLDGPKII 60 HHHHHHHHHG IKDSGATSEW MGHTDHDGDN HRHHHHHPWC SDEVLALLRF RSTVENWFPE 120 FTWEHTSRKL AEVGFKRSPQ ECKEKFEEEE RRYFNSNNNT NAHHMSNYNK GNYRLFSEVD 180 EFYHHGHADE EHVVSSEVGD NQNKRNSSLE GKGNVEETGQ DLLEDKTDHQ DQCQVDESSM 240 GNKLNSIVNV VEVGNVEDDA KSSSSASLMM IMRDNKKRKR KKKKERFGVL KGFCEGLVRN 300 VIAQQEEMHK NLLEDMMKKE GEKIAREEAW KKQEMERLNG EVEIRAQEQA MASDRNTSII 360 KFISKFTDHN NHDDGNNKVQ SPNPSQDSSS LVLSNPQGSR KCQTSSSLQT LTPQNPSLEP 420 TSPKTLKTKI HNPKPPKGDE QGDIGKRWPR DEVLALINIR RSISSMNDDI PLPSPSSSTK 480 VVPLWERISK KMLEIGYKRS AKRCKEKWEN INKYFRKTKD VNKKRPLDSR TCPYFHQLTA 540 LYSQLSTGTT TTVTADTSVE EIVTRPEENR VGSGDPDIPT ALHVDGVGEK SNVPF

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence Send to blast

MFDGGVPEQI HRFIASAQPP PPLHPHQPAA ERSLPFPASF ATFSTDHQAN MLNLDGPKII  60
HHHHHHHHHG IKDSGATSEW MGHTDHDGDN HRHHHHHPWC SDEVLALLRF RSTVENWFPE  120
FTWEHTSRKL AEVGFKRSPQ ECKEKFEEEE RRYFNSNNNT NAHHMSNYNK GNYRLFSEVD  180
EFYHHGHADE EHVVSSEVGD NQNKRNSSLE GKGNVEETGQ DLLEDKTDHQ DQCQVDESSM  240
GNKLNSIVNV VEVGNVEDDA KSSSSASLMM IMRDNKKRKR KKKKERFGVL KGFCEGLVRN  300
VIAQQEEMHK NLLEDMMKKE GEKIAREEAW KKQEMERLNG EVEIRAQEQA MASDRNTSII  360
KFISKFTDHN NHDDGNNKVQ SPNPSQDSSS LVLSNPQGSR KCQTSSSLQT LTPQNPSLEP  420
TSPKTLKTKI HNPKPPKGDE QGDIGKRWPR DEVLALINIR RSISSMNDDI PLPSPSSSTK  480
VVPLWERISK KMLEIGYKRS AKRCKEKWEN INKYFRKTKD VNKKRPLDSR TCPYFHQLTA  540
LYSQLSTGTT TTVTADTSVE EIVTRPEENR VGSGDPDIPT ALHVDGVGEK SNVPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	280	KKRKRK
2	275	282	KKRKRKKK
3	275	283	KKRKRKKKK
4	276	284	KRKRKKKKE
5	277	281	RKRKK
6	277	283	RKRKKKK
7	277	284	RKRKKKKE
8	279	284	RKKKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00362.1_g00029.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477420.1	0.0	PREDICTED: trihelix transcription factor GTL2
Swissprot	Q8H181	0.0	GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBL	A0A078IRA5	0.0	A0A078IRA5_BRANA; BnaC07g49430D protein
STRING	Bo7g093250.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8268	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	0.0	Trihelix family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]