PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00364.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 156aa    MW: 17684.7 Da    PI: 6.6185
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00364.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.2e-1058102650
                              HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                              + rr   NReA r++R++Kka+++ Le++vk L++ N+ L  +l+
  Rsa1.0_00364.1_g00004.1  58 NKRRSCGNREAVRKYREKKKARTAYLEDEVKRLKSMNEFLLRKLQ 102
                              5788899*******************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-652120IPR004827Basic-leucine zipper domain
PfamPF077161.8E-1455102IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.86455121IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.52E-757103No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-1158121No hitNo description
CDDcd146861.14E-965103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDEEEVEAWA RASGGCSHTH SCNPPGPENA SHSHTCFHTH THLIIPDSQE NGYSDGSNKR  60
RSCGNREAVR KYREKKKART AYLEDEVKRL KSMNEFLLRK LQSQAIVEAE IIRLRTLLAE  120
MQGTIDDELG GFSFQKQCNG SDFVFKEGDV SFCLVY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00364.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480324.11e-107PREDICTED: basic leucine zipper 24-like
RefseqXP_018480326.11e-107PREDICTED: basic leucine zipper 24-like
RefseqXP_018480328.11e-107PREDICTED: basic leucine zipper 24-like
RefseqXP_018480329.11e-107PREDICTED: basic leucine zipper 24-like
SwissprotQ8GTS14e-77BZP24_ARATH; Basic leucine zipper 24
TrEMBLA0A0D3BYL51e-106A0A0D3BYL5_BRAOL; Uncharacterized protein
STRINGBo4g125710.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151721518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51960.16e-68basic leucine zipper 24