PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00369.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 1267aa    MW: 139420 Da    PI: 7.6268
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00369.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.4e-0612461267426
                               ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                               ++C+ f+++G Ck G++C+F H+
  Rsa1.0_00369.1_g00015.1 1246 KICK-FYESGNCKKGASCSFWHP 1267
                               6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.104.6E-784146IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.4E-885144IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.85889155IPR019787Zinc finger, PHD-finger
CDDcd155682.87E-1991136No hitNo description
SMARTSM002494.9E-791137IPR001965Zinc finger, PHD-type
PROSITE patternPS01359092152IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475922.01E-20304381IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.6E-22305386IPR003121SWIB/MDM2 domain
SMARTSM001513.5E-4306385IPR019835SWIB domain
PfamPF022013.3E-13309380IPR003121SWIB/MDM2 domain
SMARTSM007191.1E-46439549IPR004343Plus-3 domain
PROSITE profilePS5136018.756439572IPR004343Plus-3 domain
SuperFamilySSF1590422.62E-25440568IPR004343Plus-3 domain
PfamPF031262.3E-17444547IPR004343Plus-3 domain
SuperFamilySSF552771.29E-15696752IPR003169GYF domain
PROSITE profilePS5082915.353699753IPR003169GYF domain
CDDcd000727.48E-19699756No hitNo description
SMARTSM004441.8E-14700755IPR003169GYF domain
PfamPF022136.1E-11701745IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.6E-16701753IPR003169GYF domain
PROSITE profilePS5010314.15512421267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-612421266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-412461266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1267 aa     Download sequence    Send to blast
MENQQRGASS RGEKSSVRGI DLMRVDQCEE IGALSSAPAP AVVGTIEQEA PVKRKRGRPP  60
KAHATTPLQT QQPPPPQPPP PPRKDDKEED VCFICFDGGD LVLCDRRNCP KAYHPTCINR  120
DEAFFRTTAK WNCGWHICSA CQKSSSYMCY TCTFSVCKRC VAYADYVFVR GNMGLCGTCI  180
KPIMLIENIG QGDVQAVKVD FDDKLSWEYL FKVYWLCLKE ELSLTVDELT RAYNPWKEAP  240
YTVPIVEPRN DHTRNNAYSS GNSALDVAEN GTKRRKTSGS STLPSKLDDN NPSNNLKKLP  300
GDTNWATKEL LEFLSFMRNG DTSVISQFDV QGLLLDYIKK KNLRDPQQKS QVMCDLMLVK  360
LFGKQRVGHL EMFKLLESHF LIQEKPKDEK TTNVETTHAV PSQVDEDSGH EPPVRDRRRK  420
MRRKTDGRVQ NENLDAYAAI DVHNINLIYL RRKFLETLLD DISKVHEKVV GTILRIKVSG  480
SDQKLDIHRL VQVVGTSKAA ATYQLGAKTT DVMLEILNLE KREVISIDQL SDQNVTEDEC  540
KRLRQSIKCG LNKRLTVGDI LKTATTLQAM RINETLEAEI LKVKHLRDRA SENGLLESPE  600
HRQRLLQEVP EVHTDPSMDP SHPSAEDAVL GTRKQDNHIK AQSKGPKKKG NLGNNEQRKY  660
DAPVLRSRKA VNVTKKDDCS KVHNNSSDIQ ESGKDDEESE IWHYRDPTGK TQGPFSMVQL  720
RRWKSCGHFP PYLRIWKAHE NQDESVLLTE ALAGRFDKAT TSPSSSLLPQ ELKLSQHDSG  780
RSGVDGDCLQ KNLTPVSNSA ASSSSSTVSA LPNDPKEKQV VTLLPCSAKV KDGNSVRSKP  840
QVSCPASTSV VPGHVVTPDV RETSGADGKT VKKGTNGGSV HAPNLNQEIH VPDIRSPTPK  900
SSPEDLEAQA AETIQSLSSC VLAKGTSGVT WSTSTTSTTD AATTTSSVVV TGEQLPQVTQ  960
QDAVVSAAPS VKPVDLAADH ATATQTSGNT QVGHSSGWPA IVADPDECDE SVSDLLAEVE  1020
AMEQNGLPSS PTSTFHYDDD DLTKGPEKDF FNPVARMSLT PETCNRMNIS QPSILDNVSA  1080
GKSSMGTEAK DNTLFNHCGT AGPELQLFAP PAPTSVSQDL TLTTTALRLG SETTVKGGSV  1140
ERLPKSLSGV GLEPSPRSSS LHDPPRGNTE RGPRGNTERS PRGHGSHQRR SGGHSRERQW  1200
WNNDHNSSVN NSRNHNHRQW PYSSSHGHGH DHGSGSYTAH PPKGLKICKF YESGNCKKGA  1260
SCSFWHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A8e-14891581581Histone-lysine N-methyltransferase NSD3
4gnd_C8e-14891581581Histone-lysine N-methyltransferase NSD3
4gne_A8e-14891581581Histone-lysine N-methyltransferase NSD3
4gnf_A8e-14891581581Histone-lysine N-methyltransferase NSD3
4gng_A8e-14891581581Histone-lysine N-methyltransferase NSD3
4gng_D8e-14891581581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00369.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896270.0AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480378.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X1
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A3N6QE950.0A0A3N6QE95_BRACR; Uncharacterized protein
STRINGBra012868.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding