PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00370.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 366aa    MW: 40077.6 Da    PI: 8.093
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00370.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014119142123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              ++C  Cg+ F+   +L++Hi + H
  Rsa1.0_00370.1_g00012.1 119 FSCAACGEIFPKTNLLEHHIAVkH 142
                              89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.058119147IPR007087Zinc finger, C2H2
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.106.0E-4144262IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563996.33E-14144365No hitNo description
Gene3DG3DSA:3.90.228.101.9E-6292365IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAARKLGSLL RQHFFSLFFL FVGCFFFPKG GDCKPKKRKK KKKKLRTVSS GSGSGLSSSW  60
TSLKRVFLSK PRDQTHSNGQ STTLTSARSS HNSLVNLVQP DPETRIAEPD PPLCDDEIFS  120
CAACGEIFPK TNLLEHHIAV KHAVTELTDG ESSTNIVKII FNSGWPNHQG NNKAPEIHRI  180
LKIHNSPKIL ARFEEYRELV KAKAARTSRS DDERCVADGN ELLRFYCSTF MCDLGRNGDS  240
SLCGHQYCSV CGIIGAGFSP KLDGIATLAT GWRGHAAVPE EVEEEFGFLN VKRAMLVCRV  300
VAGRVGCDMI EDDDVDKSDG GGYDSVVGQG SGGSNKSGAL LRIDDEELIV FNPRAVLPCF  360
VIVYTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13539KKRKK
23543KKRKKKKKK
33743RKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00370.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325770.0AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477398.10.0PREDICTED: uncharacterized protein LOC108848506
TrEMBLA0A3P6CUC50.0A0A3P6CUC5_BRAOL; Uncharacterized protein
STRINGBo4g169520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-153C2H2 family protein