PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00383.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 228aa    MW: 25047.4 Da    PI: 5.3995
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00383.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.2e-11755346
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                             +WT+eE+e l  +v ++G+g W+ I +          R+  ++k++w++
  Rsa1.0_00383.1_g00016.1  7 KWTPEEEEALMAGVLKHGPGKWRYILADSEyssvlHSRSNVDLKDKWRN 55
                             8**********************************9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.649161IPR017930Myb domain
SuperFamilySSF466891.15E-15259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-14456IPR009057Homeodomain-like
SMARTSM007171.3E-4459IPR001005SANT/Myb domain
PfamPF002493.7E-8655IPR001005SANT/Myb domain
CDDcd116604.06E-19656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGAPKHKWTP EEEEALMAGV LKHGPGKWRY ILADSEYSSV LHSRSNVDLK DKWRNISVAA  60
TCGSRKKAKQ DDDNTKALTI LALTNGDDGG QQHFALSCDT PQDLFTSVDN MILEAITNFE  120
GPLGPDRNSI LMYPEVDTNM QLNMEQLVTS RLEHLINIET IVKIENRYSI SQGYAVAKAI  180
AEAELAIAEA EVAAREAENA EAKAEAARIF AKAAKKALKA YNAMQLGK
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00383.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481056.11e-167PREDICTED: telomere repeat-binding factor 3-like
SwissprotQ9M2X31e-67TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLA0A078GDE31e-101A0A078GDE3_BRANA; BnaC07g31550D protein
TrEMBLA0A0D3DDQ81e-101A0A0D3DDQ8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F1T51e-101A0A3P6F1T5_BRAOL; Uncharacterized protein
STRINGBo7g099090.11e-102(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2026256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.19e-68telomere repeat binding factor 3
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]