PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00383.1_g00025.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 238aa MW: 26170.5 Da PI: 8.0483

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00383.1_g00025.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.1	6.5e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C++ +l+p++ +++q +++ +++k+FG++ ++++++++pe++r+++++sl+yeA+ r+ +Pv+Gavg+++ Rsa1.0_00383.1_g00025.1 2 SCNGCRVLRKGCSETSILRPCIqwiesAESQGHATVFLAKFFGRAGLTSFISSVPESQRPALFQSLLYEACGRTVNPVNGAVGLLW 87 6*******************9999777889************************************************** PP DUF260 82 klqqqleqlkaelall 97 ++++ ++q+++e++l+ Rsa1.0_00383.1_g00025.1 88 TGNWSICQAAVETVLR 103 ********999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.645	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-23	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSCNGCRVLR KGCSETSILR PCIQWIESAE SQGHATVFLA KFFGRAGLTS FISSVPESQR 60 PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WSICQAAVET VLRGGSLRPI PELLTRDGGF 120 PSPTSDEASE ICTEMMNDSG DRSIYHHSRF SSSRSRSTAS PPKRRRLASE QQRPEIDFSL 180 TPAFPTKTTP FKEETRRPET PSLYSEESVI TAPFQDNIAS ERFVRGGGET AKLLNLFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	166	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00383.1_g00025.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481052.1	1e-174	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SN23	1e-124	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A3P6ETJ5	1e-144	A0A3P6ETJ5_BRAOL; Uncharacterized protein
STRING	Bra036040.1-P	1e-144	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-100	LOB domain-containing protein 38